BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1628.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775649.1| outer membrane porin [Herbaspirillum seroped... 446 e-123 ref|YP_004752216.1| outer membrane porin protein [Collimonas fun... 387 e-105 ref|YP_001630845.1| outer membrane porin protein precursor [Bord... 282 6e-74 ref|NP_891085.1| outer membrane porin protein precursor [Bordete... 280 3e-73 ref|NP_886218.1| outer membrane porin protein precursor [Bordete... 279 6e-73 >ref|YP_003775649.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ63741.1| outer membrane porin protein [Herbaspirillum seropedicae SmR1] Length = 374 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 272/374 (72%), Positives = 318/374 (85%), Gaps = 5/374 (1%) Query: 1 MKKSSMLLLAAGLTTGGAAFAQSSVTIYGIVDTSIRYLSNDNAQGSSNVRMDNGAISNSR 60 MKKSS+LLLAAGLT+GGAAFAQS+VTIYGIVDTSI YLSN NAQG+SNVRMDNGAI+NSR Sbjct: 1 MKKSSLLLLAAGLTSGGAAFAQSNVTIYGIVDTSIHYLSNANAQGNSNVRMDNGAIANSR 60 Query: 61 IGFKGTEDLGGGLKAVFRLENGFSSDTGAAQQGSRLFGRQSWVGLAGDFGKVSVGRQNTA 120 IGFKGTEDLGGGLKA+F+LENGFSSDTGA QQG LFGRQSWVGL G FGKV VGRQNT Sbjct: 61 IGFKGTEDLGGGLKAMFQLENGFSSDTGAMQQGGSLFGRQSWVGLQGGFGKVRVGRQNTP 120 Query: 121 LFDLMADHFDPLTVGNYETNSWMPAAATRVRSDNTVRYDGQFGPVAASVSYAFGEQAGST 180 LFDL+ADHFDPLTVGNY +NSW+PAAA+ VRS N +RYDG FGPVAAS S+AFGE+AGS Sbjct: 121 LFDLLADHFDPLTVGNYASNSWLPAAASLVRSPNMLRYDGDFGPVAASASWAFGEKAGSV 180 Query: 181 RSGSQISTALRYNNGGFAIGGGFQQTVDTTTARNKATTYNLSASYAFGAAKVFAGYYRMK 240 R+GSQ S+ALRY G A+GGG+QQTV +T + K TT+NLSASY FG AKVF G+ +K Sbjct: 181 RTGSQFSSALRYTAGPLALGGGYQQTVSSTNSSLKHTTWNLSASYDFGVAKVFGGWLNIK 240 Query: 241 DATGVNGAFME-----TTNYSLANTAGGNTVGVERKDDGYFFGANYQATAALSLTGGVYY 295 D +G+ G+ M + ++ A A + GV+RKD+G+F G++Y+AT AL+LTG YY Sbjct: 241 DDSGLTGSVMAADGDVSNGWTTAGAANNGSTGVKRKDNGFFLGSSYKATNALTLTGAFYY 300 Query: 296 DKSKNVAYQALGNVGDGKRYTIVGVAEYALSKRTQLYTTVDYNKAKDAAVYEITNSANGK 355 D+SKNV+Y + GNVGDGKRYT+VG A+YALSKRTQLYTT+DYNKAKDAAVYE+TNSANGK Sbjct: 301 DRSKNVSYVSTGNVGDGKRYTLVGWADYALSKRTQLYTTIDYNKAKDAAVYELTNSANGK 360 Query: 356 SNLTTVGVGIRHIF 369 ++LTTVGVGIRHIF Sbjct: 361 NSLTTVGVGIRHIF 374 >ref|YP_004752216.1| outer membrane porin protein [Collimonas fungivorans Ter331] gb|AEK61393.1| outer membrane porin protein precursor [Collimonas fungivorans Ter331] Length = 362 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 239/369 (64%), Positives = 280/369 (75%), Gaps = 7/369 (1%) Query: 1 MKKSSMLLLAAGLTTGGAAFAQSSVTIYGIVDTSIRYLSNDNAQGSSNVRMDNGAISNSR 60 MKK S++L+AAGL +G +A AQ++VTIYGIVDTSIRYLS+DNA G N + NGAISNSR Sbjct: 1 MKKYSLMLVAAGLASG-SAMAQTNVTIYGIVDTSIRYLSSDNAAGQKNFVITNGAISNSR 59 Query: 61 IGFKGTEDLGGGLKAVFRLENGFSSDTGAAQQGSRLFGRQSWVGLAGDFGKVSVGRQNTA 120 IGFKGTEDLGGGLKA+FRLENGF+SDTG+ + LF RQS+VGL+G FG V++GRQ T Sbjct: 60 IGFKGTEDLGGGLKAIFRLENGFNSDTGSMSSANTLFSRQSYVGLSGSFGTVTLGRQQTP 119 Query: 121 LFDLMADHFDPLTVGNYETNSWMPAAATRVRSDNTVRYDGQFGPVAASVSYAFGEQAGST 180 LFDLMADHFDPLTVGNY+ N+WMPA AT +R+ N ++Y G FG +AA +SYA GE+AGS Sbjct: 120 LFDLMADHFDPLTVGNYDQNAWMPAGATLIRNSNMLKYYGTFGGLAAGISYAAGEKAGSV 179 Query: 181 RSGSQISTALRYNNGGFAIGGGFQQTVDTTTARNKATTYNLSASYAFGAAKVFAGYYRMK 240 + GSQI L Y G FAIGGGFQQTV T + K T YNLS SY GAAK+F GYYR+K Sbjct: 180 KLGSQIGGTLAYTAGPFAIGGGFQQTVSPTNSDWKDTAYNLSLSYTLGAAKLFGGYYRIK 239 Query: 241 DATGVNGAFMETTNYSLANTAGGNTVGVERKDDGYFFGANYQATAALSLTGGVYYDKSKN 300 D+TG A+ TN A + G GVERKDD YF GA YQAT A SLT YYDKSKN Sbjct: 240 DSTGTTPAYFGVTNS--AASINGGIGGVERKDDAYFLGATYQATPAWSLTAAGYYDKSKN 297 Query: 301 VAYQALGNVGDGKRYTIVGVAEYALSKRTQLYTTVDYNKAKDAAVYEITNSANGKSNLTT 360 V LGN+GDG RY +VGVAEYALSKRTQ+Y TVDYNKAK+AA+ E+ GK ++T Sbjct: 298 VTVATLGNLGDGTRYALVGVAEYALSKRTQVYGTVDYNKAKNAALSELV----GKDSVTG 353 Query: 361 VGVGIRHIF 369 V VGIRHIF Sbjct: 354 VAVGIRHIF 362 >ref|YP_001630845.1| outer membrane porin protein precursor [Bordetella petrii DSM 12804] emb|CAP42577.1| outer membrane porin protein precursor [Bordetella petrii] Length = 352 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 182/370 (49%), Positives = 232/370 (62%), Gaps = 19/370 (5%) Query: 1 MKKSSMLLLAAGLTTGGAAFAQSSVTIYGIVDTSIRYLSNDNAQGSSNVRMDNGAISNSR 60 MKK+++ LLA G A AQ+SVT+YGI D S+RYLS + S + NGAISNSR Sbjct: 1 MKKTAIALLALTGLAAGTAAAQTSVTLYGIADISMRYLSRSSQDDGSRFGLANGAISNSR 60 Query: 61 IGFKGTEDLGGGLKAVFRLENGFSSDTGAAQQGSRLFGRQSWVGL-AGDFGKVSVGRQNT 119 G +GTEDLG G+KA FRLENGFS G + F R +++GL G G +++G QNT Sbjct: 61 WGLRGTEDLGDGMKAFFRLENGFSMQNGNGSDPDKTFSRLAYLGLDGGAIGTLTLGLQNT 120 Query: 120 ALFDLMADHFDPLTVGNYETNSWMPAAATRVRSDNTVRYDGQFGPVAASVSYAFGEQAGS 179 +F+L+ADHFDPLTVGNY+ N+W+PAA +RVR+ N Y G +A +SYA GE Sbjct: 121 PMFNLLADHFDPLTVGNYDQNAWLPAAMSRVRTGNMFTYSNTLGGLALVLSYANGEDYDD 180 Query: 180 TRSGSQISTALRYNNGGFAIGGGFQQTVDTTTARNKATTYNLSASYAFGAAKVFAGYYRM 239 + GSQ +LRY G A+GG +QQT T + ++ +NL+ASY F +AK+FAGY+ Sbjct: 181 HKVGSQYGASLRYTFGQLALGGAYQQTYSDTNSDDRQRVWNLNASYQFDSAKLFAGYFNG 240 Query: 240 KDATGVNGAFMETTNYSLANTAGGNTVGVERKDDGYFFGANYQATAALSLTGGVYYDKSK 299 +D TG A M G G++RKDDGYF G +QAT ++TG YYD+SK Sbjct: 241 RDETGFVNAVM----------GGTPMPGLDRKDDGYFAGVTWQATPRWAVTGAAYYDRSK 290 Query: 300 NVAYQALGNVGDGKRYTIVGVAEYALSKRTQLYTTVDYNKAKDAAVYEITNSANGKSNLT 359 NVA GKRY +V VAEYALSKR+Q+Y TVDYNK KDAA EI NG S+ Sbjct: 291 NVAESG----DKGKRYALVAVAEYALSKRSQVYATVDYNKVKDAARDEI----NGGSSQL 342 Query: 360 TVGVGIRHIF 369 VG RHIF Sbjct: 343 GAAVGFRHIF 352 >ref|NP_891085.1| outer membrane porin protein precursor [Bordetella bronchiseptica RB50] emb|CAE34914.1| outer membrane porin protein precursor [Bordetella bronchiseptica RB50] Length = 354 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 219/355 (61%), Gaps = 18/355 (5%) Query: 17 GAAFAQSSVTIYGIVDTSIRYLSNDNAQGSSNVRMDNGAISNSRIGFKGTEDLGGGLKAV 76 G A A++SVT+YGI D S+RYLS N G+S V M+NGAISNSR G +G EDLG G+KA Sbjct: 16 GTAHAETSVTLYGIADVSVRYLSTGNDNGNSRVSMENGAISNSRWGLRGVEDLGDGMKAF 75 Query: 77 FRLENGFSSDTGAAQQGSRLFGRQSWVGL-AGDFGKVSVGRQNTALFDLMADHFDPLTVG 135 FRLE+GF+ G F R ++VGL G+ G +S+GRQ+T LF ++AD +DPLTVG Sbjct: 76 FRLESGFNVQNGERSDPDSFFNRHAYVGLDGGEIGAISLGRQDTPLFTILADSYDPLTVG 135 Query: 136 NYETNSWMPAAATRVRSDNTVRY-DGQFGPVAASVSYAFGEQAGSTRSGSQISTALRYNN 194 NY NSW+P A +R RS N+VRY + + +SYAF + + G Q L Y Sbjct: 136 NYAQNSWLPVAMSRARSSNSVRYRNDKLAGFDVILSYAFSDSFEDHKLGEQYGGTLSYTT 195 Query: 195 GGFAIGGGFQQTVDTTTARNKATTYNLSASYAFGAAKVFAGYYRMKDATGVNGAFMETTN 254 G F+IGGG+ T + + + +NL+ASY F AKVF GY+ +D TG A M N Sbjct: 196 GPFSIGGGYMLTHSASNSDYQQRVWNLNASYKFETAKVFIGYFNGRDETGFVNAVM--GN 253 Query: 255 YSLANTAGGNTVGVERKDDGYFFGANYQATAALSLTGGVYYDKSKNVAYQALGNVGDGKR 314 SL + G+ERKD+GYF G +QAT +LTG YYD SKN+ + GKR Sbjct: 254 TSLPDN------GLERKDNGYFAGVTWQATPRWALTGAAYYDTSKNLVEEG----DKGKR 303 Query: 315 YTIVGVAEYALSKRTQLYTTVDYNKAKDAAVYEITNSANGKSNLTTVGVGIRHIF 369 Y +VGVAEYALSKRTQ+Y T+DYNK KDAA EI G VGIRHIF Sbjct: 304 YALVGVAEYALSKRTQVYGTIDYNKVKDAATGEI----QGDDKQIGAAVGIRHIF 354 >ref|NP_886218.1| outer membrane porin protein precursor [Bordetella parapertussis 12822] emb|CAE39361.1| outer membrane porin protein precursor [Bordetella parapertussis] Length = 354 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 218/355 (61%), Gaps = 18/355 (5%) Query: 17 GAAFAQSSVTIYGIVDTSIRYLSNDNAQGSSNVRMDNGAISNSRIGFKGTEDLGGGLKAV 76 G A++SVT+YGI D S+RYLS N G+S V M+NGAISNSR G +G EDLG G+KA Sbjct: 16 GTVHAETSVTLYGIADVSVRYLSTGNDNGNSRVSMENGAISNSRWGLRGVEDLGDGMKAF 75 Query: 77 FRLENGFSSDTGAAQQGSRLFGRQSWVGL-AGDFGKVSVGRQNTALFDLMADHFDPLTVG 135 FRLE+GF+ G F R ++VGL G+ G +S+GRQ+T LF ++AD +DPLTVG Sbjct: 76 FRLESGFNVQNGERSDPDSFFNRHAYVGLDGGEIGAISLGRQDTPLFTILADSYDPLTVG 135 Query: 136 NYETNSWMPAAATRVRSDNTVRY-DGQFGPVAASVSYAFGEQAGSTRSGSQISTALRYNN 194 NY NSW+P A +R RS N+VRY + + +SYAF + + G Q L Y Sbjct: 136 NYAQNSWLPVAMSRARSSNSVRYRNDKLAGFDVILSYAFSDSFEDHKLGEQYGGTLSYTT 195 Query: 195 GGFAIGGGFQQTVDTTTARNKATTYNLSASYAFGAAKVFAGYYRMKDATGVNGAFMETTN 254 G F+IGGG+ T + + + +NL+ASY F AKVF GY+ +D TG A M N Sbjct: 196 GPFSIGGGYMLTHSASNSDYQQRVWNLNASYKFETAKVFIGYFNGRDETGFVNAVM--GN 253 Query: 255 YSLANTAGGNTVGVERKDDGYFFGANYQATAALSLTGGVYYDKSKNVAYQALGNVGDGKR 314 SL + G+ERKD+GYF G +QAT +LTG YYD SKN+ + GKR Sbjct: 254 TSLPDN------GLERKDNGYFAGVTWQATPRWALTGAAYYDTSKNLVEEG----DKGKR 303 Query: 315 YTIVGVAEYALSKRTQLYTTVDYNKAKDAAVYEITNSANGKSNLTTVGVGIRHIF 369 Y +VGVAEYALSKRTQ+Y T+DYNK KDAA EI G VGIRHIF Sbjct: 304 YALVGVAEYALSKRTQVYGTIDYNKVKDAATGEI----QGDDKQIGAAVGIRHIF 354