BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1626.p (477 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [He... 679 0.0 ref|YP_004753060.1| D-amino acid dehydrogenase small subunit [Co... 321 2e-85 ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxa... 311 2e-82 ref|YP_001100025.1| putative D-amino acid dehydrogenase small su... 297 2e-78 ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacteriu... 288 1e-75 >ref|YP_003775647.1| D-amino acid dehydrogenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63739.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum seropedicae SmR1] Length = 423 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 349/423 (82%), Positives = 385/423 (91%) Query: 55 VNSTQRQIAVIGGGLSGICSAYFLAARGYEVAVIERRAHVAEEATFGDSGLLAPGAAMPL 114 +NST RQIAVIGGGLSGICSAYFLA +GYEVAVIERRAHVAEEATFGDSGLLAPG AMPL Sbjct: 1 MNSTHRQIAVIGGGLSGICSAYFLATKGYEVAVIERRAHVAEEATFGDSGLLAPGTAMPL 60 Query: 115 TLPGAMATFACRFQDEPRVLLAPGTDFGRRRWMRATRQAQHHDFAGNKLRLTRLSAYGQS 174 TLPGA+ATFACRFQDEPRVLLA G DFGRRRWMRATR AQ H FA +KL L+RLSAYGQ Sbjct: 61 TLPGALATFACRFQDEPRVLLASGADFGRRRWMRATRAAQQHHFAQHKLILSRLSAYGQD 120 Query: 175 LTLQLQAHHNLDHENGQGVFHLFRQPAEAARMAQLEEAAGQCEFKHQALDAAGIRTLEPA 234 LT QLQAH+N++HEN GVFHLFRQ AEAAR+ L+EAA QCE+K LDAAGIR LEPA Sbjct: 121 LTQQLQAHYNMEHENSAGVFHLFRQSAEAARLPALQEAASQCEYKQLTLDAAGIRALEPA 180 Query: 235 FSSEAKLSGALYYPEDMAGNCVLFAKQMRNAAQELGVSFHFDSTVTSINAEFGGRVMLQL 294 FSSEA L+GALYYP+D+AGN VLFAKQMRNAAQ LGVSFHF+STV+SI +EFGGRV L++ Sbjct: 181 FSSEAALAGALYYPDDIAGNSVLFAKQMRNAAQALGVSFHFNSTVSSIRSEFGGRVTLEV 240 Query: 295 QSPHLASQMRVDAVVVAAGMSSAELLRPLDTDLPLLALQSYSALVPVKNPDDAPSMALHD 354 QSPHLAS + +DAVVVAAGM+SA LL+PLDT LPL ALQSYSALVPVKNPDDAP+MAL+D Sbjct: 241 QSPHLASHLTMDAVVVAAGMASAALLQPLDTSLPLRALQSYSALVPVKNPDDAPTMALYD 300 Query: 355 DSYKVSMTRLGSRIRISGLLGFVPQSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNT 414 DSYKV+MTRLGSRIRISGLLGFVP SQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSN+ Sbjct: 301 DSYKVAMTRLGSRIRISGLLGFVPASQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNS 360 Query: 415 MALLPHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGLLPRD 474 +A++P GLP++GPTRQGN+FVNVGHG TGWAASVGSARLL+D++AGEETEI T GLLPRD Sbjct: 361 IAMMPTGLPVVGPTRQGNIFVNVGHGVTGWAASVGSARLLSDMMAGEETEIATAGLLPRD 420 Query: 475 VLA 477 VL Sbjct: 421 VLG 423 >ref|YP_004753060.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK62237.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 425 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 187/415 (45%), Positives = 263/415 (63%), Gaps = 7/415 (1%) Query: 58 TQRQIAVIGGGLSGICSAYFLAARGYEVAVIERRAHVAEEATFGDSGLLAPGAAMPLTLP 117 TQ+QI VIGGG+ G+CSAYFLA G++VAV+E+R++VAE++T G+SG+L+ GAA+P +P Sbjct: 10 TQKQIVVIGGGVMGVCSAYFLAEAGHQVAVVEQRSNVAEQSTLGNSGILSAGAALPWAVP 69 Query: 118 GAM-ATFACRFQDEPRVLLAPGTDFGRRRWMRA-TRQAQHHDFAGNKLRLTRLSAYGQSL 175 G A F E +L D RWMR +++ F + ++ RL++Y Q L Sbjct: 70 GMRRKILAGMFNQEAPNVLNARFDPTLWRWMRRWMAESEIQRFRSHTHQMQRLASYSQDL 129 Query: 176 TLQLQAHHNLDHENGQGVFHLFRQPAEAARMAQLEEAAGQCEFKHQALDAAGIRTLEPAF 235 Q+Q H LD E G+ LFR AE A +A E +C HQ LD AG R EPA Sbjct: 130 LEQIQQHFQLDFEQSPGLLRLFRSEAELAALAPTRELLTECGVAHQLLDEAGARLQEPAL 189 Query: 236 SSEAKLSGALYYPEDMAGNCVLFAKQMRNAAQELGVSFHFDSTVTSINAEFGGRVMLQLQ 295 +S KL+G LY+P+ +GNC LF KQ++ Q LGV FHFDS V++I + G +V L + Sbjct: 190 ASAGKLAGGLYFPDLGSGNCTLFTKQLKAILQGLGVQFHFDSKVSAIVPQ-GAQVALHID 248 Query: 296 SPHLASQMRVDAVVVAAGMSSAELLRPLDTDLPLLALQSYSALVPVKNPDDAPSMALHDD 355 + + DAVV A G +SA+LL+PL LPL A+++Y+A VKN + AP MA+ D Sbjct: 249 ----GNVLLADAVVCATGGASAQLLKPLGLRLPLHAIKTYTATATVKNYEVAPRMAMLDG 304 Query: 356 SYKVSMTRLGSRIRISGLLGFVPQSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNTM 415 SY+V+M R+G RIR++G+ F Q T KA+R LLK+A D++P+AAN+N A FW Sbjct: 305 SYQVTMARIGDRIRLAGIAEFGAQDMTFDDKAMRTLLKVAHDWFPDAANFNSASFWCGHT 364 Query: 416 ALLPHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGL 470 +L +PL+G T NVFVN+GHG +GW+ ++G+A++LAD V G EI +GL Sbjct: 365 PMLADEVPLVGHTGASNVFVNIGHGGSGWSMALGAAKVLADQVDGRAPEIDLDGL 419 >ref|ZP_08273101.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33446.1| D-amino acid dehydrogenase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 414 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 173/412 (41%), Positives = 248/412 (60%), Gaps = 7/412 (1%) Query: 61 QIAVIGGGLSGICSAYFLAARGYEVAVIERRAHVAEEATFGDSGLLAPGAAMPLTLPGAM 120 Q+AVIGGG+ G+ +AYFLAA G+EVA+IERR++VAEEA+FG+SGL+AP + P +PG Sbjct: 2 QVAVIGGGVLGVSTAYFLAAAGHEVALIERRSNVAEEASFGNSGLVAPALSAPWAMPGMP 61 Query: 121 AT-FACRFQDEPRVLLAPGTDFGRRRWMRA-TRQAQHHDFAGNKLRLTRLSAYGQSLTLQ 178 FA F+ E ++L D RW R + F NKLRL R+ Y + + Q Sbjct: 62 GKLFAQWFRQESPMVLRRRLDPALWRWARRWVSECDAERFRINKLRLQRIGFYSRDVLEQ 121 Query: 179 LQAHHNLDHENGQGVFHLFRQPAEAARMAQLEEAAGQCEFKHQALDAAGIRTLEPAFSSE 238 L+ H+N+D+E G LFR + QL + E H LDA R LEP + Sbjct: 122 LRLHYNMDYEQTVGHLQLFRGAPDVLLAQQLLTLLAEMEVPHNVLDADAARLLEPGLCAA 181 Query: 239 AKLSGALYYPEDMAGNCVLFAKQMRNAAQELGVSFHFDSTVTSINAEFGGRVMLQLQSPH 298 L+ AL++P+D AGNC LFAKQ++ AQ LGVSF F +V I RV L ++ Sbjct: 182 TPLTAALHFPQDEAGNCALFAKQLKTIAQSLGVSFLFGKSVDRIE-RIDNRVALHME--- 237 Query: 299 LASQMRVDAVVVAAGMSSAELLRPLDTDLPLLALQSYSALVPVKNPDDAPSMALHDDSYK 358 + DAVV+ AG+ + LL L LP L +Q YSA +++ D+AP +L DD+YK Sbjct: 238 -GNSFTADAVVLTAGIENPTLLNELGVRLPALPVQGYSATCSIRDFDEAPLASLTDDTYK 296 Query: 359 VSMTRLGSRIRISGLLGFVPQSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNTMALL 418 ++TR G+R+RI+G+L +S +P A R L K+A D++PNA+NYN A WS +L Sbjct: 297 TTITRFGNRVRIAGVLDPGARSPEVPEAAQRTLRKVATDWFPNASNYNNATLWSGLRTML 356 Query: 419 PHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGL 470 P G+P++G T NV+V + GA+GW ++G+ ++L+DLV+G +I +GL Sbjct: 357 PDGVPVMGATPVRNVYVGLDDGASGWTTALGTGKILSDLVSGRTPDIDLDGL 408 >ref|YP_001100025.1| putative D-amino acid dehydrogenase small subunit [Herminiimonas arsenicoxydans] emb|CAL61900.1| D-amino acid dehydrogenase, small subunit [Herminiimonas arsenicoxydans] Length = 414 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 168/402 (41%), Positives = 236/402 (58%), Gaps = 7/402 (1%) Query: 73 CSAYFLAARGYEVAVIERRAHVAEEATFGDSGLLAPGAAMPLTLPGAMATFACRF-QDEP 131 C+AYFLA G++V VIERR +VAEEA+FGDSG+LAP + P PGA + + E Sbjct: 14 CTAYFLAEAGHQVVVIERRNNVAEEASFGDSGILAPASIAPWAAPGAAKSLLSHLLKSES 73 Query: 132 RVLLAPGTDFGRRRWMRA-TRQAQHHDFAGNKLRLTRLSAYGQSLTLQLQAHHNLDHENG 190 +L D RW+R ++ + N+ R+ R++ Y + QL+ H LD+E Sbjct: 74 PLLFNRMLDPSMWRWIRRWLKECDIERYQINRNRMQRIAFYSDQIMRQLRELHQLDYEQA 133 Query: 191 QGVFHLFRQPAEAARMAQLEEAAGQCEFKHQALDAAGIRTLEPAFSSEAKLSGALYYPED 250 G LFR + + H DA G R +EPA + L+G+L+ P D Sbjct: 134 PGYLQLFRSERDLQLAKPAFDFLAAHGIPHDFPDADGARAIEPALNPHTPLAGSLHLPTD 193 Query: 251 MAGNCVLFAKQMRNAAQELGVSFHFDSTVTSINAEFGGRVMLQLQSPHLASQMRVDAVVV 310 +GNC LF +QMR AQ +GV FHF V SI G V +Q++ A+ D VV+ Sbjct: 194 ESGNCPLFTRQMRQLAQAIGVEFHFGCNVKSIRQSEHG-VDIQIEDRSFAA----DRVVL 248 Query: 311 AAGMSSAELLRPLDTDLPLLALQSYSALVPVKNPDDAPSMALHDDSYKVSMTRLGSRIRI 370 A+G S++LL PL LP+ ++SYSA ++N + AP AL D+SYKV++TR+G+RIRI Sbjct: 249 ASGADSSKLLAPLGLHLPVYPVKSYSATATIRNFESAPVAALMDESYKVAITRMGNRIRI 308 Query: 371 SGLLGFVPQSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNTMALLPHGLPLIGPTRQ 430 SG+ ++ L L LLK+ D++P+A NYN A FWS T +LP G PLIG T+ Sbjct: 309 SGMAELGARTSDLRQAGLNTLLKVGYDWFPDACNYNTAAFWSGTSLMLPDGPPLIGATQV 368 Query: 431 GNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGLLP 472 NV+VN+GHG+TGWA + GSAR+LAD+V+G +I +GL P Sbjct: 369 RNVYVNIGHGSTGWAMAAGSARVLADIVSGRTPDIDLDGLTP 410 >ref|YP_001353230.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] gb|ABR88666.1| D-amino-acid dehydrogenase [Janthinobacterium sp. Marseille] Length = 414 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 167/417 (40%), Positives = 239/417 (57%), Gaps = 13/417 (3%) Query: 61 QIAVIGGGLSGICSAYFLAARGYEVAVIERRAHVAEEATFGDSGLLAPGAAMPLTLPGAM 120 Q+AVIG G+ G+ +AYFLA G+EV VIER +VAEEA++GDSG+LA + P PG Sbjct: 2 QVAVIGAGVIGVSTAYFLAEAGHEVVVIERHNNVAEEASYGDSGILAASSIAPWAAPGVP 61 Query: 121 ATF-ACRFQDEPRVLL----APGTDFGRRRWMRATRQAQHHDFAGNKLRLTRLSAYGQSL 175 +F + + E VLL P RRWM+ +A + N+ R+ R+ Y + + Sbjct: 62 RSFLSYLLKSEAPVLLNQPWRPSMLGWMRRWMK---EADIERYRINRERMQRIGFYSRDI 118 Query: 176 TLQLQAHHNLDHENGQGVFHLFRQPAEAARMAQLEEAAGQCEFKHQALDAAGIRTLEPAF 235 L+ H LD+E G LFR + + + H+ LDA ++ A Sbjct: 119 MQMLRERHQLDYEQTPGYLQLFRTERDLQLAKTSFDYLSEHNIPHKLLDAGQAHAVDSAL 178 Query: 236 SSEAKLSGALYYPEDMAGNCVLFAKQMRNAAQELGVSFHFDSTVTSINAEFGGRVMLQLQ 295 + L+GALY PED AGNC LF +Q+R AQ +GV F F S V SI G V LQ+ Sbjct: 179 NPNTPLAGALYLPEDEAGNCPLFTRQIRAQAQAMGVEFLFGSKVKSIEESKRG-VHLQID 237 Query: 296 SPHLASQMRVDAVVVAAGMSSAELLRPLDTDLPLLALQSYSALVPVKNPDDAPSMALHDD 355 +++ VVVA G SA+LL PL LPL A++SY A ++N + AP A+ D+ Sbjct: 238 DHSFSAE----CVVVAGGADSAKLLTPLGLHLPLRAVKSYCATATIRNFESAPVAAVVDE 293 Query: 356 SYKVSMTRLGSRIRISGLLGFVPQSQTLPPKALRNLLKIAGDYYPNAANYNQAHFWSNTM 415 +YK+++TR+G RIR++G + L AL LLK+ D++P+A NYN A FWS + Sbjct: 294 AYKIAITRMGKRIRVAGTAELGSNNAELRQTALNTLLKVGYDWFPDACNYNTAAFWSGSS 353 Query: 416 ALLPHGLPLIGPTRQGNVFVNVGHGATGWAASVGSARLLADLVAGEETEIPTEGLLP 472 LP G PL+G R NV++N+GHG+TGWA + GS ++LAD+++G +I +GL P Sbjct: 354 LALPDGAPLLGACRVRNVYLNIGHGSTGWAMAAGSGKVLADVISGRTPDIDLDGLTP 410