BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1624.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775645.1| drug/metabolite transporter (DMT) superfamil... 540 e-151 ref|YP_004685352.1| drug/metabolite transporter (DMT) superfamil... 236 4e-60 ref|YP_726003.1| DMT family permease [Ralstonia eutropha H16] >g... 227 2e-57 ref|ZP_06688050.1| conserved hypothetical protein [Achromobacter... 217 2e-54 ref|NP_885220.1| integral membrane protein [Bordetella parapertu... 213 4e-53 >ref|YP_003775645.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ63737.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 296/314 (94%), Positives = 306/314 (97%) Query: 1 MSSAVLPYIRIAHNHKLGIIFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60 MSSAVL + IA HKLGI+FLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF Sbjct: 1 MSSAVLSQLPIARTHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60 Query: 61 MAATLAPLYRRRHGRSILKSNRLGLQLGRGALLLASTLIFFSVLKIVPLAEGTAMNFCAP 120 MAATLAPLYRRRHGRSIL+SNRLGLQLGRGALLL STLIFFSVLKIVPLAEGTAMNFCAP Sbjct: 61 MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP 120 Query: 121 MIVLAISPWLLGERSYLSRWIAVLIGFTGMLIVIRPSGDIPPVGVALGLVSAFTQALLSI 180 +IVLAISPWLLGERSYLSRWIAVL+GFTGMLIVIRPSGDIPP GVALGL+SA TQALLSI Sbjct: 121 LIVLAISPWLLGERSYLSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSI 180 Query: 181 LNRKASQADNPMVTLFYGALVGSIVSTLLVPFFWTSHTPTVVELAILVSTGITSTIGHFL 240 LNRKASQADNPMVTLFYGALVGS+VSTLLVPFFWTSHTPT+VELAILVSTGITSTIGHFL Sbjct: 181 LNRKASQADNPMVTLFYGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFL 240 Query: 241 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDQITVLGIAIICASGIGIAYIEHK 300 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPD++TVLGIAIICASGIGIAYIEHK Sbjct: 241 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHK 300 Query: 301 RAHPLPPADPMESV 314 RAHPLPPADPMESV Sbjct: 301 RAHPLPPADPMESV 314 >ref|YP_004685352.1| drug/metabolite transporter (DMT) superfamily permease [Cupriavidus necator N-1] gb|AEI76871.1| drug/metabolite transporter (DMT) superfamily permease protein [Cupriavidus necator N-1] Length = 320 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 133/282 (47%), Positives = 183/282 (64%), Gaps = 8/282 (2%) Query: 18 GIIFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRSI 77 GI L+ G W LSLLD K L G +V +AW+RY ++ + L P R R Sbjct: 19 GIALLVIGQWILSLLDATSKTLTQQGLPLVAVAWVRYVGHVVAIFLLLGPAGWRCQWRPA 78 Query: 78 LKSNRLGLQLGRGALLLASTLIFFSVLKIVPLAEGTAMNFCAPMIVLAISPWLLGER--- 134 +LGLQ RG L+L STL+FFSVL ++PLA+ TA+NFCAP+ V+A+SPWLLGER Sbjct: 79 ----KLGLQWLRGGLMLVSTLVFFSVLMLMPLAQATALNFCAPLFVVALSPWLLGERPGR 134 Query: 135 -SYLSRWIAVLIGFTGMLIVIRPSGDIPPVGVALGLVSAFTQALLSILNRKASQADNPMV 193 + RW V++GF GML+V+RP G + P+GV LGLVSA AL+ +L R+ + D PM Sbjct: 135 HARWMRWTGVVVGFAGMLVVVRPGGQLSPLGVGLGLVSALVFALMQMLTRRIAAHDAPMT 194 Query: 194 TLFYGALVGSIVSTLLVPFFWTSHTPTVVELAILVSTGITSTIGHFLQNSAYRHAEASVL 253 TL + G+ ++TL+VPFFW S PT ++ A+L+S GIT ++GH+ A+++A+AS L Sbjct: 195 TLIQSGVTGACLTTLIVPFFWFSAWPTPMQCALLLSAGITGSLGHYFVIRAFQYADASFL 254 Query: 254 TPFFYAQIISACGMGWLVFGQFPDQITVLGIAIICASGIGIA 295 +PF Y QI+SA +G+L F Q PD T GI IIC G+ +A Sbjct: 255 SPFLYLQILSATVIGYLAFDQLPDWTTAAGIGIICLGGLCVA 296 >ref|YP_726003.1| DMT family permease [Ralstonia eutropha H16] emb|CAJ92635.1| permease of the drug/metabolite transporter (DMT) superfamily [Ralstonia eutropha H16] Length = 320 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 128/267 (47%), Positives = 176/267 (65%), Gaps = 8/267 (2%) Query: 18 GIIFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRSI 77 GI L+ G W LSLLD K L G +V +AW+RY ++ + L P R R+ Sbjct: 19 GIALLVIGQWILSLLDATSKTLTQQGLPLVAVAWVRYVGHVVAIFLLLGPAGWRHQWRAA 78 Query: 78 LKSNRLGLQLGRGALLLASTLIFFSVLKIVPLAEGTAMNFCAPMIVLAISPWLLGER--- 134 R GLQ RGAL+L STL+FFSVL ++PLA+ TA+NFCAP+ V+A+SPWLLGER Sbjct: 79 ----RPGLQWLRGALMLVSTLVFFSVLMLMPLAQATALNFCAPLFVVALSPWLLGERPGR 134 Query: 135 -SYLSRWIAVLIGFTGMLIVIRPSGDIPPVGVALGLVSAFTQALLSILNRKASQADNPMV 193 + RW V++GF GML+V+RP G + P+GV LGLVSA AL+ +L R+ + D PM Sbjct: 135 HARWMRWTGVVVGFAGMLVVVRPGGQLSPLGVGLGLVSALVFALMQMLTRRIAAHDTPMT 194 Query: 194 TLFYGALVGSIVSTLLVPFFWTSHTPTVVELAILVSTGITSTIGHFLQNSAYRHAEASVL 253 TL + G+ ++TL+VPFFW S PT ++ A+L+S GIT ++GH+ A+++A+AS L Sbjct: 195 TLIQSGVTGACLTTLIVPFFWFSAWPTPMQCALLLSAGITGSLGHYFVIRAFQYADASFL 254 Query: 254 TPFFYAQIISACGMGWLVFGQFPDQIT 280 +PF Y QI+SA +G+L FGQ PD T Sbjct: 255 SPFLYLQILSATVIGYLAFGQLPDWTT 281 >ref|ZP_06688050.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF75013.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 127/294 (43%), Positives = 188/294 (63%), Gaps = 10/294 (3%) Query: 17 LGIIFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRS 76 +GI+ L+ +WTLS LD +GK + AG +++++W RY ++L + A + P G Sbjct: 21 VGILLLVLSMWTLSCLDASGKWVMNAGVPLLVLSWFRYVVHLILVLALVLP----ARGLR 76 Query: 77 ILKSNRLGLQLGRGALLLASTLIFFSVLKIVPLAEGTAMNFCAPMIVLAISPWLLGERSY 136 +L+SNR QL RG + +TL+FF+ L +P AE TA+NF AP++VL+++PW+L E + Sbjct: 77 VLRSNRPREQLIRGGSMFLATLMFFTTLSYIPQAEATAINFLAPLLVLSLAPWVLKEPAR 136 Query: 137 LSRWIAVLIGFTGMLIVIRPSGDIPPVGVALGLVSAFTQALLSILNRKASQADNPMVTLF 196 LSR++A I F G++IVIRP G + P+G GL++A A I R+ + D+P +L Sbjct: 137 LSRFVAAGIAFIGVIIVIRPGGGLHPIGTIFGLLTACCFAAQFIATRRVA-GDDPFTSLI 195 Query: 197 YGALVGSIVSTLLVPFFWTSHTPTVVELA-----ILVSTGITSTIGHFLQNSAYRHAEAS 251 + VG++ T+ +PF + P + L+ +L+STG+T +GH Q +AYR A AS Sbjct: 196 WSGAVGTVCLTVTLPFVLPAALPVLQSLSGFDWFLLISTGLTGGVGHLFQIAAYRRAPAS 255 Query: 252 VLTPFFYAQIISACGMGWLVFGQFPDQITVLGIAIICASGIGIAYIEHKRAHPL 305 L PF Y QIISA +GWLV+G FPD +T LGIAIICASGIGI +E +R+ L Sbjct: 256 TLAPFIYLQIISATSVGWLVWGHFPDPLTWLGIAIICASGIGIGLVEWRRSMAL 309 >ref|NP_885220.1| integral membrane protein [Bordetella parapertussis 12822] emb|CAE38328.1| conserved integral membrane protein [Bordetella parapertussis] Length = 319 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 130/296 (43%), Positives = 184/296 (62%), Gaps = 9/296 (3%) Query: 17 LGIIFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFFMAATLAPLYRRRHGRS 76 +G+ LI +WTLS LD +GK + AG ++++ W+RY ++L + + P G Sbjct: 27 IGVALLILSMWTLSGLDASGKWVMAAGVPLLVLCWVRYLVHLVLVLTLVLP----ARGLR 82 Query: 77 ILKSNRLGLQLGRGALLLASTLIFFSVLKIVPLAEGTAMNFCAPMIVLAISPWLLGERSY 136 IL++ R Q+ RGA + +TL+FF+ L +P AE TA+NF AP+IVL+I+PW+L E Sbjct: 83 ILRATRPREQIVRGAAMFCATLLFFTTLSYLPQAEATAINFLAPLIVLSIAPWVLKEPPR 142 Query: 137 LSRWIAVLIGFTGMLIVIRPSGDIPPVGVALGLVSAFTQALLSILNRKASQADNPMVTLF 196 LSRW+A + F G+LIVIRP G + P+GV GL++A A I RK + D+P +L Sbjct: 143 LSRWVAAGVAFLGVLIVIRPDGGLHPLGVMFGLLTACCFAAQYIATRKVA-GDDPYTSLI 201 Query: 197 YGALVGSIVSTLLVPFFWTSHTPTVVELA----ILVSTGITSTIGHFLQNSAYRHAEASV 252 + VG++ T +PF P + EL+ +L+STG++ +GH LQ AYR+A AS Sbjct: 202 WSGAVGALCLTAALPFILPPAMPVLRELSLGNWLLLSTGVSGALGHLLQIGAYRNAAAST 261 Query: 253 LTPFFYAQIISACGMGWLVFGQFPDQITVLGIAIICASGIGIAYIEHKRAHPLPPA 308 L PF Y QI+SA +GWL +G FPD IT LGIAIICASG I +E +R L PA Sbjct: 262 LAPFVYLQIVSATTIGWLFWGHFPDAITWLGIAIICASGSVIGVLEWRRGRRLAPA 317