BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1616.p (585 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillu... 874 0.0 ref|YP_299713.1| binding-protein dependent transport system inne... 622 e-176 ref|YP_004680321.1| ABC transporter permease [Cupriavidus necato... 608 e-172 ref|YP_728281.1| ABC transporter permease [Ralstonia eutropha H1... 607 e-171 ref|YP_002152765.1| ABC transporter permease [Proteus mirabilis ... 599 e-169 >ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63730.1| ABC-type Fe3+ transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 578 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 519/576 (90%), Positives = 540/576 (93%), Gaps = 3/576 (0%) Query: 10 TSPMPALARDHTEAGAVSVRRSATDRSQWLPGAMKWLLLALLLLGLGGPLLFILAQAVLT 69 ++P+P L+ E + S DRSQWLP +KWLLL LL LGL GPLLFILAQAVLT Sbjct: 6 SAPLPTLS---AETSTSTRPASVPDRSQWLPALLKWLLLMLLALGLVGPLLFILAQAVLT 62 Query: 70 PEGNWAGSQPFVTLFANINFLPMLGRSLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLW 129 P G WAGS+PF LFANINFLPMLGRSLWVS +TAVVTVPLAYVFAYALQRTCIP KGLW Sbjct: 63 PAGEWAGSRPFAQLFANINFLPMLGRSLWVSAMTAVVTVPLAYVFAYALQRTCIPGKGLW 122 Query: 130 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAMMILL 189 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHA+MILL Sbjct: 123 RGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHALMILL 182 Query: 190 SALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG 249 SALSQADGRLYDAA AMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG Sbjct: 183 SALSQADGRLYDAAQAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGG 242 Query: 250 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFALDAWLQRRQRATMSSRSEAYVP 309 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTF LDAWLQRRQRA+MSSRSE YVP Sbjct: 243 AYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFTLDAWLQRRQRASMSSRSETYVP 302 Query: 310 RPDWRRDGINLLAVALIAAAVLMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA 369 +PDWRRDG NLLAVALIA+A+LMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA Sbjct: 303 QPDWRRDGANLLAVALIASAILMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLA 362 Query: 370 YWNSLKLACGTSVAGTLVIFTGAWLMEKTRGQAWLAPLLRMLSFLPMAVPGLVLGLGSLL 429 YWNSL+LACGTSVAGTL+IF GAWLMEKTRGQAWL+ LLRML FLPMAVPGLVLGLGSLL Sbjct: 363 YWNSLRLACGTSVAGTLLIFCGAWLMEKTRGQAWLSTLLRMLCFLPMAVPGLVLGLGSLL 422 Query: 430 FFNHPSNPFNFLYGTMTLLVLCSIVHFYTTAHLTAVTALKQLDPEFEAASLSLKVPLLQT 489 FFNHP+NPFNFLYGTMTLLVLC +VHFYTTA LTAVTALKQLDPEFEAASLSLKVPLL+T Sbjct: 423 FFNHPANPFNFLYGTMTLLVLCCVVHFYTTAQLTAVTALKQLDPEFEAASLSLKVPLLKT 482 Query: 490 FLRVTVPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA 549 F+RVTVPLCLPQ+LEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA Sbjct: 483 FIRVTVPLCLPQLLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAA 542 Query: 550 MSTLILLTSAAASLLMHLAGSRWLARAQAWRRGRAH 585 MSTLILLTSAAASLLMHL G RWLARAQAWRRGRAH Sbjct: 543 MSTLILLTSAAASLLMHLGGRRWLARAQAWRRGRAH 578 >ref|YP_299713.1| binding-protein dependent transport system inner membrane protein [Ralstonia eutropha JMP134] gb|AAZ64869.1| Binding-protein-dependent transport systems inner membrane component [Ralstonia eutropha JMP134] Length = 580 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 364/543 (67%), Positives = 420/543 (77%), Gaps = 1/543 (0%) Query: 40 PGAMKWLLLALLLLGLGGPLLFILAQAVLTPEGNWAGSQPFVTLFANINFLPMLGRSLWV 99 P AMKWL L + L PL+ + QA G WA LFAN NFLP+LGRS+ V Sbjct: 36 PAAMKWLWLLGGAIALLLPLVALFRQAWFDGAGQWALGTRLAELFANPNFLPLLGRSVAV 95 Query: 100 STVTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFK 159 S T V VPLA+ FAYALQR+ I + LWRGI LLPL APSLLP IAL+YLFGNQG+F+ Sbjct: 96 SLATVAVVVPLAFGFAYALQRSRIAVRPLWRGIALLPLFAPSLLPAIALVYLFGNQGIFR 155 Query: 160 E-WMDGSIYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRWRIFTTVT 218 + + G IYGFWGILLGE FYTFPHA+M+L++ LS AD RLY+AA AMGAS WR F TVT Sbjct: 156 QVFGAGGIYGFWGILLGEAFYTFPHALMVLVATLSLADARLYEAARAMGASPWRTFCTVT 215 Query: 219 LPATRYGIFGALCLVFTLTITDFGVPKITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLL 278 LP R G+F A CLV TL ITDFGVPK+ GG Y VLA+EAYKAVVGQQ+F GALIG+LL Sbjct: 216 LPGARQGLFAAACLVLTLVITDFGVPKVVGGGYPVLALEAYKAVVGQQKFDTGALIGMLL 275 Query: 279 LVPALLTFALDAWLQRRQRATMSSRSEAYVPRPDWRRDGINLLAVALIAAAVLMMIVVAM 338 L+PALLTF +D +QRRQRA MSSR++ YVPRPD RD I LL VA ++AA+L ++ A+ Sbjct: 276 LLPALLTFGVDMAMQRRQRAQMSSRAQVYVPRPDRVRDAICLLMVAAVSAALLTVLATAV 335 Query: 339 GASLVKLWPYNLQLTLQHYDFDNMDGGGWLAYWNSLKLACGTSVAGTLVIFTGAWLMEKT 398 GASLVKLWPYNLQLTL HYDFDNMDGGGWLAY NSLKL+ T++AG +IF GAWL E+T Sbjct: 336 GASLVKLWPYNLQLTLGHYDFDNMDGGGWLAYRNSLKLSLMTAIAGAAIIFLGAWLTERT 395 Query: 399 RGQAWLAPLLRMLSFLPMAVPGLVLGLGSLLFFNHPSNPFNFLYGTMTLLVLCSIVHFYT 458 RG AWL +LR LPMAVPGLVLGLG + FFN P NP + LYGTM LLVLC++ HFYT Sbjct: 396 RGPAWLHAVLRGGFLLPMAVPGLVLGLGYVFFFNAPDNPLHGLYGTMALLVLCNVAHFYT 455 Query: 459 TAHLTAVTALKQLDPEFEAASLSLKVPLLQTFLRVTVPLCLPQMLEIFRYLFVSSMTTVS 518 T HLTA AL+QLD EFEAA+LSL V L T RVTVP+CLP +L+IFRYLFVSSMTTVS Sbjct: 456 TGHLTAAAALRQLDTEFEAAALSLGVAPLVTCWRVTVPICLPAILDIFRYLFVSSMTTVS 515 Query: 519 AVIFLYRPDTVLASVAVLNMDDAGDVGPAAAMSTLILLTSAAASLLMHLAGSRWLARAQA 578 AVIFLY DTVLA+++VLNMDDAGD PAAAMSTLILLT+ A+LL+H A + WL R QA Sbjct: 516 AVIFLYSSDTVLAAISVLNMDDAGDTAPAAAMSTLILLTAIVAALLLHAASAGWLRRTQA 575 Query: 579 WRR 581 WRR Sbjct: 576 WRR 578 >ref|YP_004680321.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI79089.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 576 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 367/571 (64%), Positives = 425/571 (74%), Gaps = 3/571 (0%) Query: 15 ALARDHTEAGAVSVRRS--ATDRSQWLPGAMKWLLLALLLLGLGGPLLFILAQAVLTPEG 72 A H A S R + A+ + P AMKW+ LA L +GL PLL + QA G Sbjct: 6 ATVESHPGTQAASSRGTGLASRLAHGAPAAMKWIWLAGLAVGLLLPLLALFRQAWFDAAG 65 Query: 73 NWAGSQPFVTLFANINFLPMLGRSLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLWRGI 132 WA L + NFLPMLGRS+ VS + VPLA+ FAYALQR+CI + LWRGI Sbjct: 66 QWALGARMAALVTSPNFLPMLGRSVAVSLAVVALVVPLAFGFAYALQRSCIALRPLWRGI 125 Query: 133 GLLPLLAPSLLPGIALIYLFGNQGLFK-EWMDGSIYGFWGILLGEVFYTFPHAMMILLSA 191 LLPL APSLLP IAL+YLFGNQG+F+ + G IYGFWGI+LGE FYTFPHA+M+L++ Sbjct: 126 ALLPLFAPSLLPAIALVYLFGNQGIFRGAFGQGGIYGFWGIVLGEAFYTFPHALMVLVAT 185 Query: 192 LSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGGAY 251 LS AD RLY+AA AMGAS WR F TVTLP R G+F A CLV TL ITDFGVPK+ GG Y Sbjct: 186 LSLADARLYEAARAMGASPWRTFCTVTLPGARQGLFAAACLVLTLVITDFGVPKVVGGGY 245 Query: 252 SVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFALDAWLQRRQRATMSSRSEAYVPRP 311 VLA+EAYK+VVGQQQF RGALIG+LLL PALLTFA+D +Q+RQR M SR++ YVP P Sbjct: 246 PVLALEAYKSVVGQQQFDRGALIGMLLLAPALLTFAVDMAMQQRQRTQMGSRAQVYVPAP 305 Query: 312 DWRRDGINLLAVALIAAAVLMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLAYW 371 + RDG LL VAL++AA+L +I A+GASLVKLWPYNL LTL HYDFDNMDGGGWLAY Sbjct: 306 ERGRDGACLLLVALVSAALLAVIATAVGASLVKLWPYNLGLTLAHYDFDNMDGGGWLAYR 365 Query: 372 NSLKLACGTSVAGTLVIFTGAWLMEKTRGQAWLAPLLRMLSFLPMAVPGLVLGLGSLLFF 431 NSLKL+ T++AGT IF GAWL +TRG AWL +LR LPMAVPGLVLGLG + FF Sbjct: 366 NSLKLSALTALAGTAAIFLGAWLTLRTRGPAWLHGVLRASFLLPMAVPGLVLGLGYVFFF 425 Query: 432 NHPSNPFNFLYGTMTLLVLCSIVHFYTTAHLTAVTALKQLDPEFEAASLSLKVPLLQTFL 491 N P NP + LYGTM LLVLC++ H YTT HLTA AL+QLD EFEAA+LSL V L T Sbjct: 426 NAPGNPLHALYGTMALLVLCNVAHCYTTGHLTAAAALRQLDNEFEAAALSLGVAPLVTCW 485 Query: 492 RVTVPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAAMS 551 RVTVP+CLP +L+IFRYLFVSSMTTVSAVIFLY PDTVLA+++VLNMDDAGD PAAAMS Sbjct: 486 RVTVPVCLPALLDIFRYLFVSSMTTVSAVIFLYSPDTVLAAISVLNMDDAGDTAPAAAMS 545 Query: 552 TLILLTSAAASLLMHLAGSRWLARAQAWRRG 582 TLILLTS A+LL+H + WL RAQ WR G Sbjct: 546 TLILLTSVLAALLLHAVSAGWLRRAQRWRAG 576 >ref|YP_728281.1| ABC transporter permease [Ralstonia eutropha H16] emb|CAJ94916.1| ABC-type transporter, duplicated permease domains [Ralstonia eutropha H16] Length = 575 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 363/544 (66%), Positives = 416/544 (76%), Gaps = 1/544 (0%) Query: 40 PGAMKWLLLALLLLGLGGPLLFILAQAVLTPEGNWAGSQPFVTLFANINFLPMLGRSLWV 99 P AMKWL LA L +GL PLL + QA G WA L + NFLPMLGRS+ V Sbjct: 32 PTAMKWLWLAGLAVGLLLPLLALFRQAWFDAAGQWALGARMAALVTSSNFLPMLGRSVAV 91 Query: 100 STVTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFK 159 S + VPLA+ FAYALQR+CI + LWRGI LLPL APSLLP IAL+YLFGNQG+F+ Sbjct: 92 SLAVVALVVPLAFGFAYALQRSCIALRPLWRGIALLPLFAPSLLPAIALVYLFGNQGIFR 151 Query: 160 -EWMDGSIYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRWRIFTTVT 218 + G IYGFWGI+LGE FYTFPHA+M+L++ LS AD RLY+AA AMGAS WR F TVT Sbjct: 152 GAFGQGGIYGFWGIVLGEAFYTFPHALMVLVATLSLADARLYEAARAMGASPWRTFCTVT 211 Query: 219 LPATRYGIFGALCLVFTLTITDFGVPKITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLL 278 LP R G+F A CLV TL ITDFGVPK+ GG Y VLA+EAYKAVVGQQQF RGALIG+LL Sbjct: 212 LPGARQGLFAAACLVLTLVITDFGVPKVVGGGYPVLALEAYKAVVGQQQFDRGALIGMLL 271 Query: 279 LVPALLTFALDAWLQRRQRATMSSRSEAYVPRPDWRRDGINLLAVALIAAAVLMMIVVAM 338 L PALLTFA+D +Q+RQR M SR++ YVP P+ RDG LL VAL++AA+L +I A+ Sbjct: 272 LAPALLTFAVDMAMQQRQRTQMGSRAQVYVPAPERGRDGACLLLVALVSAALLAVIATAL 331 Query: 339 GASLVKLWPYNLQLTLQHYDFDNMDGGGWLAYWNSLKLACGTSVAGTLVIFTGAWLMEKT 398 GASLVKLWPYNL LTL HYDFDNMDGGGWLAY NSLKL+ T++AGT IF GAWL +T Sbjct: 332 GASLVKLWPYNLGLTLAHYDFDNMDGGGWLAYRNSLKLSALTALAGTAAIFLGAWLTLRT 391 Query: 399 RGQAWLAPLLRMLSFLPMAVPGLVLGLGSLLFFNHPSNPFNFLYGTMTLLVLCSIVHFYT 458 RG AWL +LR LPMAVPGLVLGLG + FFN P NP + LYGTM LLVLC++ H YT Sbjct: 392 RGPAWLHGVLRAGFLLPMAVPGLVLGLGYVFFFNAPGNPLHALYGTMALLVLCNVAHCYT 451 Query: 459 TAHLTAVTALKQLDPEFEAASLSLKVPLLQTFLRVTVPLCLPQMLEIFRYLFVSSMTTVS 518 T HLTA AL+QLD EFEAA+LSL V L T RVTVP+CLP +L+IFRYLFVSSMTTVS Sbjct: 452 TGHLTAAAALRQLDNEFEAAALSLGVAPLVTCWRVTVPVCLPALLDIFRYLFVSSMTTVS 511 Query: 519 AVIFLYRPDTVLASVAVLNMDDAGDVGPAAAMSTLILLTSAAASLLMHLAGSRWLARAQA 578 AVIFLY PDTVLA+++VLNMDDAGD PAAAMSTLILLTS A+LL+H + WL RAQ Sbjct: 512 AVIFLYSPDTVLAAISVLNMDDAGDTAPAAAMSTLILLTSVLAALLLHAVSAGWLRRAQR 571 Query: 579 WRRG 582 WR G Sbjct: 572 WRAG 575 >ref|YP_002152765.1| ABC transporter permease [Proteus mirabilis HI4320] emb|CAR46033.1| ABC transporter permease protein [Proteus mirabilis HI4320] Length = 563 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 326/510 (63%), Positives = 407/510 (79%), Gaps = 1/510 (0%) Query: 75 AGSQPFVTLFANINFLPMLGRSLWVSTVTAVVTVPLAYVFAYALQRTCIPFKGLWRGIGL 134 G Q + LF + NFL ++G S+ VS AV+TVPLAY+FAYAL RT IPFK LWRGI L Sbjct: 53 GGFQAAIDLFTSANFLWLVGNSISVSLSVAVITVPLAYLFAYALHRTLIPFKSLWRGISL 112 Query: 135 LPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAMMILLSALSQ 194 LPLLAPS+LPGIAL+YLFGNQGL + + SIYG+WG++LGEV YTFPHA+MILLSALS Sbjct: 113 LPLLAPSMLPGIALVYLFGNQGLLRSLLTESIYGYWGLVLGEVIYTFPHALMILLSALSM 172 Query: 195 ADGRLYDAAHAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPKITGGAYSVL 254 +D RL+DAA ++GAS WR F +VT ++R+GIF ALCLVFTLTITDFG+P + GG Y VL Sbjct: 173 SDARLFDAASSLGASSWRTFRSVTWSSSRHGIFAALCLVFTLTITDFGIPVVVGGDYQVL 232 Query: 255 AVEAYKAVVGQQQFGRGALIGLLLLVPALLTFALDAWLQRRQRATMSSRSEAYVPRPDWR 314 A+EAYKAV+GQQQFGRGALIG+LLL+PALLTF +D WL++RQR MSSR++ Y+P+ +++ Sbjct: 233 ALEAYKAVLGQQQFGRGALIGMLLLLPALLTFGVDVWLRKRQRDAMSSRAQFYLPKANFQ 292 Query: 315 RDGINLLAVALIAAAVLMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGGGWLAYWNSL 374 RD + L+ V LI A L++ A+ +S ++ WPYNL +L+HY+F+ + GGWLAY NS+ Sbjct: 293 RDTLYLIFVMLICALFLLVFGTAVYSSFIQFWPYNLSFSLRHYNFEGLP-GGWLAYTNSI 351 Query: 375 KLACGTSVAGTLVIFTGAWLMEKTRGQAWLAPLLRMLSFLPMAVPGLVLGLGSLLFFNHP 434 LA T+ G +IF GA+L+EKT +WL LLRMLSF+PMAVPGLVLGLG + FFN P Sbjct: 352 ILAFYTATIGCFLIFMGAYLIEKTASHSWLNNLLRMLSFVPMAVPGLVLGLGYVFFFNLP 411 Query: 435 SNPFNFLYGTMTLLVLCSIVHFYTTAHLTAVTALKQLDPEFEAASLSLKVPLLQTFLRVT 494 +NP NFLYG+M LLVLCSI HF+TTA++TA TAL+QLD EFEAASLSLK PL + F R+T Sbjct: 412 NNPLNFLYGSMVLLVLCSIAHFFTTAYMTASTALRQLDKEFEAASLSLKAPLYRHFWRIT 471 Query: 495 VPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVGPAAAMSTLI 554 +PLCLP +L+I+RYLFVS+MTTVSA IFLY PDT+LA+VAVLNMDDAG++G AAAMSTLI Sbjct: 472 IPLCLPALLDIYRYLFVSAMTTVSAAIFLYSPDTILAAVAVLNMDDAGNIGGAAAMSTLI 531 Query: 555 LLTSAAASLLMHLAGSRWLARAQAWRRGRA 584 L TSA S+L+ +A L R QAW + A Sbjct: 532 LTTSAGVSILLSIASQGVLRRTQAWHQREA 561