BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1614.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775636.1| secreted glycine/D-amino acid oxidase [Herba... 725 0.0 ref|ZP_07677511.1| FAD dependent oxidoreductase [Ralstonia sp. 5... 441 e-122 ref|YP_004351144.1| oxidoreductase [Pseudomonas brassicacearum s... 441 e-121 ref|YP_001892992.1| FAD dependent oxidoreductase TIGR03364 [Rals... 437 e-120 ref|YP_002875297.1| putative oxidoreductase [Pseudomonas fluores... 424 e-116 >ref|YP_003775636.1| secreted glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ63728.1| secreted glycine/D-amino acid oxidase (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 369/400 (92%), Positives = 382/400 (95%) Query: 1 MNNSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV 60 M+NSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV Sbjct: 1 MSNSLSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLV 60 Query: 61 TGQPPGIMLDLARESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYD 120 TGQPPGIMLDLARESRA+WLHLAARAHFSAREAGTLLFARSEAEHDVL EFM VRARQYD Sbjct: 61 TGQPPGIMLDLARESRAIWLHLAARAHFSAREAGTLLFARSEAEHDVLQEFMMVRARQYD 120 Query: 121 YRASLLEGDKLDTLYNGRFSHHRSALHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV 180 YRASLLEGDKL+TLYNGRF HHRS LHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV Sbjct: 121 YRASLLEGDKLNTLYNGRFRHHRSVLHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLV 180 Query: 181 HGTANGHLSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLT 240 HG +G LSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLK+EET+PLT Sbjct: 181 HGAGDGRLSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKSEETLPLT 240 Query: 241 HAVLTGLSCTHYGAFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHY 300 HAVLTGLSCTHYGAFSDLPTARAVHAEIEAN PLLNKHGIHLLVSPTPYQELIVGDSHHY Sbjct: 241 HAVLTGLSCTHYGAFSDLPTARAVHAEIEANTPLLNKHGIHLLVSPTPYQELIVGDSHHY 300 Query: 301 GTDSPPFNSEEIDELLIGLVEHTLASRVQVIERWQGVYGSKGPGPFSATPIDGKTSVVLM 360 GTD+PPFNSEEIDELL+GLVEHTLA+RV+VIERWQGVYGSKGPGPFSA ID +TSVVLM Sbjct: 301 GTDAPPFNSEEIDELLLGLVEHTLATRVKVIERWQGVYGSKGPGPFSALAIDAQTSVVLM 360 Query: 361 HTGIGMSVGLGLGERVVKALLEGDSLPTPSTQPAPATALA 400 HTGIGMSVGLGLGERVVKALLEG LP+P+ P TALA Sbjct: 361 HTGIGMSVGLGLGERVVKALLEGAELPSPTAVPVAVTALA 400 >ref|ZP_07677511.1| FAD dependent oxidoreductase [Ralstonia sp. 5_7_47FAA] gb|EFP64244.1| FAD dependent oxidoreductase [Ralstonia sp. 5_7_47FAA] Length = 407 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 231/392 (58%), Positives = 281/392 (71%), Gaps = 7/392 (1%) Query: 14 DLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQPPGIMLDLAR 73 D+A+VG+GILGLAHA AAVKRGL+V VFER+ +GAS+RNFG LVTGQPPGIMLDLAR Sbjct: 16 DVAIVGAGILGLAHAAAAVKRGLRVTVFERSDIAVGASIRNFGQMLVTGQPPGIMLDLAR 75 Query: 74 ESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYDYRASLLEGDKLDT 133 ESRAL+L A +A AR G LLFAR+ AE DVL EFM RA + Y LL L Sbjct: 76 ESRALYLDWADKAGIFARANGALLFARNAAEEDVLDEFMATRAPAFGYNVKLLRSADLAN 135 Query: 134 LYNGRFSHHRSALHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLVHGTANGHLSTTAG 193 LY+GRF HR+AL G +DLQLYSREA+PAL ++L QGV F F TLV G L TTAG Sbjct: 136 LYDGRFLRHRAALQGVDDLQLYSREAIPALASWLAKQGVRFHFGTLVRHVEGGRLETTAG 195 Query: 194 EFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLTHAVLTGLSCTHYG 253 A+RVVVCSGHDY TL AD+L+ + + CRLQMLR+ E+ L HAVLTGLSCTHYG Sbjct: 196 VCNAQRVVVCSGHDYQTLCADQLRTLQPQVCRLQMLRVTPEDGFRLEHAVLTGLSCTHYG 255 Query: 254 AFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDSPPFNSEEID 313 AF+DLPTA+A+ +IE P L +HGIHLLVSPTPY + IVGDSH YG D+ PFN+E +D Sbjct: 256 AFADLPTAQALAMQIEHQRPELARHGIHLLVSPTPYGDWIVGDSHDYGQDARPFNAESVD 315 Query: 314 ELLIGLVEHTLASRVQVIERWQGVYGSK----GPGPFSATPIDGKTSVVLMHTGIGMSVG 369 +L+ L T ++++V+ERWQGVYG+K G G FS T +D +T+V LMH+GIGMSVG Sbjct: 316 NILLDLARDTFGAKLRVVERWQGVYGAKCRVPGSGAFSITRVDDRTTVALMHSGIGMSVG 375 Query: 370 LGLGERVVKALLEGDSLPT---PSTQPAPATA 398 L R + AL++G LP P++ PA A Sbjct: 376 PALAHRHMDALVDGTELPQWTPPASTPAAVPA 407 >ref|YP_004351144.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66140.1| Putative oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 385 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 226/383 (59%), Positives = 275/383 (71%), Gaps = 3/383 (0%) Query: 5 LSEHDPQHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQP 64 +S+HD DL +VG+G+LGLAHA+A KRGLKV VFER+ TPLGAS+RNFG LVTGQ Sbjct: 1 MSQHD---CDLLIVGAGMLGLAHAWAGAKRGLKVRVFERSHTPLGASIRNFGQALVTGQA 57 Query: 65 PGIMLDLARESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYDYRAS 124 PG+MLDLAR+SR LW L A ++ G+LLFARSEAE +L F RAR+ YR Sbjct: 58 PGVMLDLARQSRGLWAELGQAAGLQLKQQGSLLFARSEAEEALLEAFCAGRAREQGYRVE 117 Query: 125 LLEGDKLDTLYNGRFSHHRSALHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLVHGTA 184 LL G L+ LY GRF+HHR+ALHG +D QLYSREA+P +V YL GV F F+TLV Sbjct: 118 LLRGAALNGLYGGRFAHHRAALHGLDDQQLYSREALPQIVDYLRGLGVQFHFSTLVRDVE 177 Query: 185 NGHLSTTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLTHAVL 244 G T+AG F A +VVCSGHDY TL A+ L + CRLQMLR + ++ + L HAVL Sbjct: 178 PGSALTSAGSFSARHIVVCSGHDYQTLLAEPLAALQPSVCRLQMLRARLQQPLDLQHAVL 237 Query: 245 TGLSCTHYGAFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDS 304 TGLSC HYGAF+DLP A A+ A+I P L HGIHLLVSPTP+ ELI+GDSH YG+D+ Sbjct: 238 TGLSCVHYGAFADLPEAEAIRAQIRREQPELETHGIHLLVSPTPHGELIIGDSHDYGSDA 297 Query: 305 PPFNSEEIDELLIGLVEHTLASRVQVIERWQGVYGSKGPGPFSATPIDGKTSVVLMHTGI 364 PFN+E +D+L++ L EHTL ++QV+ERWQGVYGS+GPGPFS S VLMHTG+ Sbjct: 298 SPFNAEAVDDLMLALAEHTLGGKLQVLERWQGVYGSRGPGPFSVVQAGAGVSAVLMHTGL 357 Query: 365 GMSVGLGLGERVVKALLEGDSLP 387 GMSVGLGLGER + ALL + P Sbjct: 358 GMSVGLGLGERSLAALLGEEEWP 380 >ref|YP_001892992.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12J] ref|YP_002984518.1| FAD dependent oxidoreductase [Ralstonia pickettii 12D] gb|ACD29565.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12J] gb|ACS65846.1| FAD dependent oxidoreductase TIGR03364 [Ralstonia pickettii 12D] Length = 407 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 230/392 (58%), Positives = 281/392 (71%), Gaps = 7/392 (1%) Query: 14 DLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQPPGIMLDLAR 73 D+AVVG+GILGLAHA AAVKRGL+V VFER+ +GAS+RNFG LVTGQPPGIMLDLAR Sbjct: 16 DVAVVGAGILGLAHAAAAVKRGLRVTVFERSDIAVGASIRNFGQMLVTGQPPGIMLDLAR 75 Query: 74 ESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYDYRASLLEGDKLDT 133 ESRAL+L A +A AR G LLFAR+ AE VL EFM RA + Y LL L Sbjct: 76 ESRALYLDWADKAGVFARANGALLFARNAAEEAVLDEFMATRAPAFGYNVKLLRSADLAD 135 Query: 134 LYNGRFSHHRSALHGTEDLQLYSREAMPALVAYLHSQGVHFRFNTLVHGTANGHLSTTAG 193 LY+GRF HR+AL G +DLQLYSREA+PAL ++L +QGV F F TLV G L TTAG Sbjct: 136 LYDGRFMRHRAALQGFDDLQLYSREAIPALASWLATQGVRFHFGTLVRHVEGGRLETTAG 195 Query: 194 EFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLTHAVLTGLSCTHYG 253 A+RVVVCSGHDY TL AD+L+ + + CRLQMLR+ E+ L HAVLTGLSCTHYG Sbjct: 196 VCNAQRVVVCSGHDYQTLCADQLRALQPQVCRLQMLRVTPEDGFRLEHAVLTGLSCTHYG 255 Query: 254 AFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDSPPFNSEEID 313 AF+DLPTA+A+ +IE P L +HGIHLLVSPTPY + IVGDSH YG D+ PFN+E +D Sbjct: 256 AFADLPTAQALAMQIEHQRPELARHGIHLLVSPTPYGDWIVGDSHDYGQDARPFNAESVD 315 Query: 314 ELLIGLVEHTLASRVQVIERWQGVYGSK----GPGPFSATPIDGKTSVVLMHTGIGMSVG 369 +++ L T ++++V+ERWQGVYG+K G G FS T +D +T+V LMH+GIGMSVG Sbjct: 316 NIMLDLARDTFGAKLRVVERWQGVYGAKCRVPGSGAFSITRVDDRTTVALMHSGIGMSVG 375 Query: 370 LGLGERVVKALLEGDSLPT---PSTQPAPATA 398 L R + AL++G LP P++ PA A Sbjct: 376 PALAHRHMDALVDGTELPQWTPPASVPADVAA 407 >ref|YP_002875297.1| putative oxidoreductase [Pseudomonas fluorescens SBW25] emb|CAY53222.1| putative oxidoreductase [Pseudomonas fluorescens SBW25] Length = 377 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 214/371 (57%), Positives = 265/371 (71%), Gaps = 1/371 (0%) Query: 11 QHFDLAVVGSGILGLAHAYAAVKRGLKVAVFERTGTPLGASVRNFGMGLVTGQPPGIMLD 70 H DL ++G+GILGL+HAYAA KRGLKV VFER+ TPLGASVRNFG LVTGQPPG MLD Sbjct: 3 HHSDLLIIGAGILGLSHAYAAAKRGLKVKVFERSATPLGASVRNFGQALVTGQPPGPMLD 62 Query: 71 LARESRALWLHLAARAHFSAREAGTLLFARSEAEHDVLLEFMTVRARQYDYRASLLEGDK 130 LARESRA+W A RA + G LFAR+EAE +L F RA+++ Y LL+G Sbjct: 63 LARESRAIWGQWAERAGLQLKRNGAYLFARTEAEEHLLEAFCAGRAQEHGYNVDLLQGAA 122 Query: 131 LDTLYNGRFSHHRSALHGTEDLQLYSREAMPALVAYL-HSQGVHFRFNTLVHGTANGHLS 189 + LY G+F HHR+ALHG +D QLYSREA+PAL+ YL + V F F+TLV G L Sbjct: 123 MKDLYGGQFRHHRAALHGKDDQQLYSREAIPALINYLAQALNVEFYFSTLVRDVEPGQLH 182 Query: 190 TTAGEFRAERVVVCSGHDYLTLFADRLQPMNLKQCRLQMLRLKTEETVPLTHAVLTGLSC 249 +TAG FR E+++VCSGHDY TL A+ + +N CRLQMLR + + L HA+LTGLSC Sbjct: 183 STAGSFRGEQIIVCSGHDYQTLLAEAIAELNPSICRLQMLRARPAVNLNLQHALLTGLSC 242 Query: 250 THYGAFSDLPTARAVHAEIEANAPLLNKHGIHLLVSPTPYQELIVGDSHHYGTDSPPFNS 309 HYGAF+DLP A V A+I AP L++HGIHLL+SPTP+ ELI+GDSH YG+D+ PFN+ Sbjct: 243 VHYGAFADLPEAAPVQAQILREAPHLHEHGIHLLISPTPHGELIIGDSHDYGSDASPFNA 302 Query: 310 EEIDELLIGLVEHTLASRVQVIERWQGVYGSKGPGPFSATPIDGKTSVVLMHTGIGMSVG 369 E+ID+ +I L E TL ++QV+ERWQGVYGS+GP PFS S LMHTG+GMSVG Sbjct: 303 EQIDDWMIELAEQTLGCKIQVVERWQGVYGSRGPAPFSFLRAAPGISAALMHTGVGMSVG 362 Query: 370 LGLGERVVKAL 380 + ER + L Sbjct: 363 PAMAERNITTL 373