BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1612.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775634.1| LysR family transcription regulator protein ... 494 e-138 ref|YP_004753978.1| LysR family transcriptional regulator [Colli... 413 e-113 ref|YP_588007.1| LysR family transcriptional regulator [Cupriavi... 276 3e-72 ref|YP_004680281.1| LysR family transcriptional regulator [Cupri... 270 3e-70 ref|ZP_07674183.1| transcriptional regulator, LysR family [Ralst... 267 1e-69 >ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63726.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 254/297 (85%), Positives = 277/297 (93%) Query: 1 MHANLSTRLLHAFLALADCRHFGHAAERCHVSQSAFSAMIQKLETATGARLFERDTRNVS 60 M N+STRLL AFLALADCRHFGHAA+RCHVSQSAFSAMIQK+E A GARLFERDTRNV+ Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTPEGEVFVEVARQLVADMEAALADMNDYVARRKGRVAIAALPSLAAGWLPPVLAAYRQR 120 LTPEGE+FV+VARQLV+D+EAA +DM+DYVARRKGRVAIAALPSLAAGWLPPVLA YRQR Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 HPGVAVELFDAISDHCLDLLRQGKADIALTAPGPNLLEFSTQPLCADPFYLVCRKDHPLA 180 +PGV VELFDAISD CLDLLR GK DIALTAPGPNLLEF T+PLC+DPFYLVCRKDH LA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 GKRRVKVAQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATLAALIESGLGV 240 KRR+KV QLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLAT+AALIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SVVPELTLFQFRLPNLVAIALNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRS 297 SVVPELTLFQFRLPNLVAI L+AP+L RPLLIV KERSLS+AAQGLLEL++ K+++ Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKA 297 >ref|YP_004753978.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63155.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 305 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 208/294 (70%), Positives = 255/294 (86%) Query: 1 MHANLSTRLLHAFLALADCRHFGHAAERCHVSQSAFSAMIQKLETATGARLFERDTRNVS 60 M N+STR LHAFLAL +C+HF HAAERC +SQSAFS MIQKLE A GA+LFERDTRNV+ Sbjct: 1 MKLNISTRSLHAFLALQECKHFTHAAERCFMSQSAFSVMIQKLEVAVGAKLFERDTRNVT 60 Query: 61 LTPEGEVFVEVARQLVADMEAALADMNDYVARRKGRVAIAALPSLAAGWLPPVLAAYRQR 120 LT EGE+F EVAR LV+D+E+A ADM+DYVARRKGRVAIAALPSLAA LP V+A Y++ Sbjct: 61 LTAEGELFAEVARSLVSDIESAFADMSDYVARRKGRVAIAALPSLAANGLPAVIAEYKRA 120 Query: 121 HPGVAVELFDAISDHCLDLLRQGKADIALTAPGPNLLEFSTQPLCADPFYLVCRKDHPLA 180 +PG+ V+LFDA+SD CL +LRQGK DIALTAPG L+EF T+ LC+DPFYLVCR+DH LA Sbjct: 121 YPGITVQLFDALSDQCLAMLRQGKVDIALTAPGSGLIEFDTKTLCSDPFYLVCRQDHALA 180 Query: 181 GKRRVKVAQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATLAALIESGLGV 240 GKRR++++ L+GCE+IHLARSTSVRQH++ +LR V+++GLEVEHLAT+A LIESGLGV Sbjct: 181 GKRRIRISDLSGCELIHLARSTSVRQHVELLLRGIPVMNSGLEVEHLATVAGLIESGLGV 240 Query: 241 SVVPELTLFQFRLPNLVAIALNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEK 294 S+VPELTLFQFR +LV+I ++A D+VRP+LIVK KERSLSIAAQG+ ELI+++ Sbjct: 241 SIVPELTLFQFRHMDLVSIPIDAHDIVRPILIVKKKERSLSIAAQGMSELIEKR 294 >ref|YP_588007.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12738.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 299 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 157/298 (52%), Positives = 207/298 (69%), Gaps = 1/298 (0%) Query: 1 MHANLSTRLLHAFLALADCRHFGHAAERCHVSQSAFSAMIQKLETATGARLFERDTRNVS 60 M +NLS + L AF+ALA R+F AA+ CH+SQSAFSA+IQ LE G RLFER TR+V Sbjct: 1 MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD 60 Query: 61 LTPEGEVFVEVARQLVADMEAALADMNDYVARRKGRVAIAALPSLAAGWLPPVLAAYRQR 120 L+ +G F E+AR+L+ D EAA D+ D+ RRKGRVAIAALPSLA G LPP+LA++ Q+ Sbjct: 61 LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ 120 Query: 121 HPGVAVELFDAISDHCLDLLRQGKADIALTAPGPNLLEFSTQPLCADPFYLVCRKDHPLA 180 +PG+A+EL D ++D C++ +R+G+AD AL + + L D F+LVC DHPLA Sbjct: 121 YPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLRVEALVRDSFHLVCPADHPLA 180 Query: 181 GKRRVKVAQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATLAALIESGLGV 240 GKRRV LAG I L+R++SVRQHLDA L P ++ +EVEHLAT+AAL+E+GLGV Sbjct: 181 GKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLK-LNGVMEVEHLATVAALVEAGLGV 239 Query: 241 SVVPELTLFQFRLPNLVAIALNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSG 298 SVVP L LFQFR L + P LVR + +V+ K+R S AA +L+ ++ RSG Sbjct: 240 SVVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSG 297 >ref|YP_004680281.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79049.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 301 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 155/298 (52%), Positives = 202/298 (67%), Gaps = 1/298 (0%) Query: 4 NLSTRLLHAFLALADCRHFGHAAERCHVSQSAFSAMIQKLETATGARLFERDTRNVSLTP 63 NLS + L AF+ALA R+F AA CH+SQSAFSA++Q LE G+RLFER TR+V L+ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGEVFVEVARQLVADMEAALADMNDYVARRKGRVAIAALPSLAAGWLPPVLAAYRQRHPG 123 +G F + AR+L+AD E A D+ + RRKGRV+IAALPSLAAG LPP+LA +R +PG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAAGDLPPLLAQFRALYPG 121 Query: 124 VAVELFDAISDHCLDLLRQGKADIALTAPGPNLLEFSTQPLCADPFYLVCRKDHPLAGKR 183 +A+ELFD ++D C++L+RQG+AD AL + +PL D F+LVC DHPLA KR Sbjct: 122 IALELFDQLADGCIELVRQGRADFALAPAPAQDDDLRVEPLVRDTFHLVCPADHPLARKR 181 Query: 184 RVKVAQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATLAALIESGLGVSVV 243 R+ LAG I L+R+TSVRQHLDA L P + +EVEHLAT+AAL+++GLGVS V Sbjct: 182 RITPEMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSAV 240 Query: 244 PELTLFQFRLPNLVAIALNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 P L LFQFR L L P LVR + +V+ K+R S AA +++ +Q R G P Sbjct: 241 PSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQAFYRGGKPP 298 >ref|ZP_07674183.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP67299.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 299 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 154/298 (51%), Positives = 204/298 (68%), Gaps = 1/298 (0%) Query: 4 NLSTRLLHAFLALADCRHFGHAAERCHVSQSAFSAMIQKLETATGARLFERDTRNVSLTP 63 NLS + L AF AL + ++F AAE CH+SQSAFSA+IQ LE G RLF+R+TR+V LTP Sbjct: 2 NLSVKQLRAFAALREHKNFTQAAETCHLSQSAFSALIQNLEADAGVRLFDRNTRHVELTP 61 Query: 64 EGEVFVEVARQLVADMEAALADMNDYVARRKGRVAIAALPSLAAGWLPPVLAAYRQRHPG 123 EGE F E A +L+AD EA +++ D A R GRV +AALPS+AAG LP VLA + HPG Sbjct: 62 EGEAFAESALRLLADFEATFSELRDRAAARTGRVTVAALPSIAAGILPGVLATFSAEHPG 121 Query: 124 VAVELFDAISDHCLDLLRQGKADIALTAPGPNLLEFSTQPLCADPFYLVCRKDHPLAGKR 183 + + L D +SD C+D++R+G AD A+ A G ++ + QP C D F+LVC ++HPL+ K Sbjct: 122 IQLALHDQLSDSCIDMVRRGAADFAIAAMGADMAGLAAQPFCTDDFHLVCHQEHPLSRKP 181 Query: 184 RVKVAQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATLAALIESGLGVSVV 243 + V L IHLAR+TS+RQ+LDA L P + +G+EVEHLAT AAL+ + LG++V+ Sbjct: 182 ALAVGDLVDTPFIHLARNTSIRQYLDAALHPTK-LRSGMEVEHLATAAALVAANLGITVI 240 Query: 244 PELTLFQFRLPNLVAIALNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 P L LFQFRLP LV L P LVR L +++ RSLS+AAQGLL+L+ AP Sbjct: 241 PALALFQFRLPELVVRPLPLPGLVRTLYVIRRDGRSLSVAAQGLLDLLLAHPARAAAP 298