BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1608.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_472459.1| putative plasmid stabilization protein [Rhizobi...    62   4e-08
gb|EGY29144.1| Plasmid stability protein [Candidatus Regiella in...    59   2e-07
ref|ZP_08872791.1| plasmid stabilization protein [Verminephrobac...    59   2e-07
ref|YP_003775629.1| plasmid stabilization protein [Herbaspirillu...    59   3e-07
ref|ZP_07473550.1| plasmid stabilization protein [Brucella sp. B...    57   1e-06

>ref|YP_472459.1| putative plasmid stabilization protein [Rhizobium etli CFN 42]
 gb|ABC93732.1| putative plasmid stabilization protein [Rhizobium etli CFN 42]
          Length = 84

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 19 LRAALQPYSPEAEVSELVNGVAEPGGHLRMGDALCQMNRGHGLINEDVSALEDLLDRSPA 78
          LRAA+   S EAEV +++    +P   +RMGDAL ++ R  GL N D   L+ L DR+PA
Sbjct: 19 LRAAIHGRSTEAEVRDILENAVKPEQRIRMGDALAEIGRQSGLSNADFEGLDQLRDRAPA 78

Query: 79 EPIRFE 84
          EP+RFE
Sbjct: 79 EPLRFE 84


>gb|EGY29144.1| Plasmid stability protein [Candidatus Regiella insecticola R5.15]
          Length = 84

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 19 LRAALQPYSPEAEVSELVNGVAEPGGHLRMGDALCQMNRGHGLINEDVSALEDLLDRSPA 78
          +RAA   +S EAEV E++  V +P   +R+GDA   + R  GL NED   L  + D++PA
Sbjct: 19 VRAAQHGHSTEAEVREILAIVVKPETRVRLGDAFAALGRKIGLTNEDFEVLNQVRDKTPA 78

Query: 79 EPIRFE 84
          EP+RFE
Sbjct: 79 EPLRFE 84


>ref|ZP_08872791.1| plasmid stabilization protein [Verminephrobacter sp. At4]
          Length = 84

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 41/66 (62%)

Query: 19 LRAALQPYSPEAEVSELVNGVAEPGGHLRMGDALCQMNRGHGLINEDVSALEDLLDRSPA 78
          +RAA   +S EAEV E++    +P   +R+GDAL  + R  GL NED      + DR+PA
Sbjct: 19 VRAAQHGHSTEAEVREILAIAVKPENRVRLGDALAALGRKIGLTNEDFEVFNQVRDRTPA 78

Query: 79 EPIRFE 84
          EP+RFE
Sbjct: 79 EPLRFE 84


>ref|YP_003775629.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63721.1| plasmid stabilization protein [Herbaspirillum seropedicae SmR1]
          Length = 84

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query: 19 LRAALQPYSPEAEVSELVNGVAEPGGHLRMGDALCQMNRGHGLINEDVSALEDLLDRSPA 78
          +RAA    S EAE+ E++     P G LR+GDAL  M+R  GL NEDV AL+   +R+PA
Sbjct: 19 VRAAQHGRSTEAEIREILTLAVRPAGQLRLGDALAAMSRELGLSNEDVEALQQTRERAPA 78

Query: 79 EPIRFE 84
          +P+ FE
Sbjct: 79 QPMSFE 84


>ref|ZP_07473550.1| plasmid stabilization protein [Brucella sp. BO2]
 gb|EFM60447.1| plasmid stabilization protein [Brucella sp. BO2]
          Length = 84

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 19 LRAALQPYSPEAEVSELVNGVAEPGGHLRMGDALCQMNRGHGLINEDVSALEDLLDRSPA 78
          LRAA    S EAEV E++    +    +RMGDAL ++ R  GL N+D + L+ + D+ PA
Sbjct: 19 LRAAEHGRSTEAEVREILESAVKSEERIRMGDALAELGRRVGLTNDDFAVLDQVRDKVPA 78

Query: 79 EPIRFE 84
          EP+RFE
Sbjct: 79 EPMRFE 84