BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1603.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA82185.1| transcriptional regulator, XRE family [blood dis...   174   4e-42
ref|YP_998405.1| helix-turn-helix domain-containing protein [Ver...   166   2e-39
ref|YP_003643643.1| transcriptional regulator, XRE family [Thiom...   146   9e-34
ref|YP_786012.1| hypothetical protein BAV1486 [Bordetella avium ...   139   1e-31
ref|YP_003442750.1| XRE family transcriptional regulator [Alloch...   115   2e-24

>emb|CCA82185.1| transcriptional regulator, XRE family [blood disease bacterium
           R229]
          Length = 107

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/105 (93%), Positives = 102/105 (97%)

Query: 20  MGIRKIDVEKVAKAIEADASEALPDLRQALAEAKAGGGRVTTPEQIIVRQAREKSGLTQA 79
           MGI+KIDVEKVA AIEADA EALPDLRQALAEAKAG GRVTTP+QI+VRQAREKSGLTQA
Sbjct: 1   MGIKKIDVEKVATAIEADAGEALPDLRQALAEAKAGLGRVTTPDQILVRQAREKSGLTQA 60

Query: 80  AFAERIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSEELS 124
           AFAERIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELS+ELS
Sbjct: 61  AFAERIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSQELS 105


>ref|YP_998405.1| helix-turn-helix domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gb|ABM59387.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
           EF01-2]
          Length = 107

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/105 (86%), Positives = 98/105 (93%)

Query: 20  MGIRKIDVEKVAKAIEADASEALPDLRQALAEAKAGGGRVTTPEQIIVRQAREKSGLTQA 79
           MGI KID+EKVA AIEADA E LPDLRQALAEAKAG GRVTTPEQ++VR+AREKSGLTQA
Sbjct: 1   MGIGKIDIEKVATAIEADAGEVLPDLRQALAEAKAGIGRVTTPEQLLVRRAREKSGLTQA 60

Query: 80  AFAERIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSEELS 124
           AFAERI TPVATLRDWEQGRF PPGGVLCLLRL++KHPELS+ELS
Sbjct: 61  AFAERIATPVATLRDWEQGRFVPPGGVLCLLRLLVKHPELSQELS 105


>ref|YP_003643643.1| transcriptional regulator, XRE family [Thiomonas intermedia K12]
 gb|ADG31313.1| transcriptional regulator, XRE family [Thiomonas intermedia K12]
          Length = 101

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/100 (80%), Positives = 91/100 (91%)

Query: 25  IDVEKVAKAIEADASEALPDLRQALAEAKAGGGRVTTPEQIIVRQAREKSGLTQAAFAER 84
           +DV K+AKAIE+DA E LPDLRQAL EA+A  GRVTTPEQI+VR+ARE SGLTQAAFAER
Sbjct: 1   MDVYKIAKAIESDAGEPLPDLRQALDEARARAGRVTTPEQILVRKAREASGLTQAAFAER 60

Query: 85  IETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSEELS 124
           I TPVATLRDWEQGRFAPPGGVLCLLRLI +HP+L++EL+
Sbjct: 61  ISTPVATLRDWEQGRFAPPGGVLCLLRLIARHPDLTQELA 100


>ref|YP_786012.1| hypothetical protein BAV1486 [Bordetella avium 197N]
 emb|CAJ49099.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 106

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/104 (71%), Positives = 87/104 (83%)

Query: 23  RKIDVEKVAKAIEADASEALPDLRQALAEAKAGGGRVTTPEQIIVRQAREKSGLTQAAFA 82
           R+ID+E  AK IEADA E LP+LRQAL EA+ G GRVT+PEQI++RQAR KSGL Q AFA
Sbjct: 3   RRIDIEAAAKVIEADAGEPLPELRQALREAQGGAGRVTSPEQILIRQARAKSGLMQTAFA 62

Query: 83  ERIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSEELSVV 126
           +RI TPVATLRDWEQGR+ PPGGVLCLL+L+ KHPEL  +L+ V
Sbjct: 63  KRIATPVATLRDWEQGRYMPPGGVLCLLKLLNKHPELYLQLADV 106


>ref|YP_003442750.1| XRE family transcriptional regulator [Allochromatium vinosum DSM
           180]
 gb|ADC61718.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
           180]
          Length = 102

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 25  IDVEKVAKAIEADASEALPDLRQALAEAKAG-GGRVTTPEQIIVRQAREKSGLTQAAFAE 83
           ++++++A AIE DA EALP LR++LAE + G   R TTPEQ++VR AR+  GL+Q  FA+
Sbjct: 1   MNIDQIADAIEQDAGEALPGLRESLAEMRDGLVARTTTPEQMLVRSARQALGLSQPQFAD 60

Query: 84  RIETPVATLRDWEQGRFAPPGGVLCLLRLIIKHPELSEELS 124
            I+TPVATLRDWEQGRF PPG VLCLL+++ KHPE+  EL+
Sbjct: 61  LIQTPVATLRDWEQGRFTPPGAVLCLLKIVAKHPEVLTELA 101