BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1602.p         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA82186.1| conserved hypothetical protein [blood disease ba...   172   1e-41
ref|YP_998406.1| hypothetical protein Veis_3672 [Verminephrobact...   145   2e-33
ref|YP_003442749.1| hypothetical protein Alvin_0770 [Allochromat...   127   4e-28
ref|YP_003643644.1| hypothetical protein Tint_1952 [Thiomonas in...   126   9e-28
ref|YP_001585618.1| hypothetical protein Bmul_5659 [Burkholderia...   109   2e-22

>emb|CCA82186.1| conserved hypothetical protein [blood disease bacterium R229]
          Length = 98

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/98 (91%), Positives = 94/98 (95%)

Query: 1  MRTVIETPTFQKQVEKLWSEDERLAFIDWIALNPLVGDVIPGADGARKVRWSRSGSGKSS 60
          MRTVIETPTFQKQ EKLWSEDERLAFIDWIA NPL GDVIPGADGARKVRWSR+GSGKSS
Sbjct: 1  MRTVIETPTFQKQAEKLWSEDERLAFIDWIAANPLAGDVIPGADGARKVRWSRAGSGKSS 60

Query: 61 GARVIYFNLTEQEVVLLVTAYAKAERSSMLPADIKKVV 98
          GARVIYFNLTEQEVVLLV AYAKAER++MLPA+IKKVV
Sbjct: 61 GARVIYFNLTEQEVVLLVAAYAKAERANMLPAEIKKVV 98


>ref|YP_998406.1| hypothetical protein Veis_3672 [Verminephrobacter eiseniae
          EF01-2]
 gb|ABM59388.1| conserved hypothetical protein [Verminephrobacter eiseniae
          EF01-2]
          Length = 95

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/98 (79%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 1  MRTVIETPTFQKQVEKLWSEDERLAFIDWIALNPLVGDVIPGADGARKVRWSRSGSGKSS 60
          MRTVIETPTFQKQ +KLWSE+ERLAFID IA NPL GDVIPG DGARKVRW R+GSGKS 
Sbjct: 1  MRTVIETPTFQKQADKLWSENERLAFIDSIAANPLAGDVIPGEDGARKVRWGRAGSGKSG 60

Query: 61 GARVIYFNLTEQEVVLLVTAYAKAERSSMLPADIKKVV 98
          GAR   FNLTEQEVVLL   YAKAER++ML A+IKKVV
Sbjct: 61 GAR---FNLTEQEVVLLAAVYAKAERTNMLAAEIKKVV 95


>ref|YP_003442749.1| hypothetical protein Alvin_0770 [Allochromatium vinosum DSM 180]
 gb|ADC61717.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 102

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/94 (67%), Positives = 71/94 (75%)

Query: 1  MRTVIETPTFQKQVEKLWSEDERLAFIDWIALNPLVGDVIPGADGARKVRWSRSGSGKSS 60
          M+TVIETPTFQKQ + +WSEDERL F+ WIA NPL GDVIPGADGARKVRW     GK  
Sbjct: 4  MQTVIETPTFQKQADAIWSEDERLDFVTWIARNPLAGDVIPGADGARKVRWVAQAKGKRG 63

Query: 61 GARVIYFNLTEQEVVLLVTAYAKAERSSMLPADI 94
          G RVIYFN   Q VV LV  YAK+++SS+ P DI
Sbjct: 64 GVRVIYFNFMAQGVVCLVAIYAKSDQSSIQPNDI 97


>ref|YP_003643644.1| hypothetical protein Tint_1952 [Thiomonas intermedia K12]
 gb|ADG31314.1| conserved hypothetical protein [Thiomonas intermedia K12]
          Length = 98

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 76/98 (77%)

Query: 1  MRTVIETPTFQKQVEKLWSEDERLAFIDWIALNPLVGDVIPGADGARKVRWSRSGSGKSS 60
          MRTVIETPTFQKQ  ++W+++ERL FI  IA +   GDVIPGADGARKVR  R+GS KS 
Sbjct: 1  MRTVIETPTFQKQANRIWADEERLQFITCIAEHADAGDVIPGADGARKVRCKRAGSDKSG 60

Query: 61 GARVIYFNLTEQEVVLLVTAYAKAERSSMLPADIKKVV 98
          G RVIY NLT++E VLLV   AK ++ +MLP DI+KVV
Sbjct: 61 GVRVIYLNLTDEEAVLLVALCAKTDQDNMLPKDIRKVV 98


>ref|YP_001585618.1| hypothetical protein Bmul_5659 [Burkholderia multivorans ATCC
          17616]
 gb|ABX19326.1| conserved hypothetical protein [Burkholderia multivorans ATCC
          17616]
          Length = 110

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/85 (57%), Positives = 63/85 (74%)

Query: 1  MRTVIETPTFQKQVEKLWSEDERLAFIDWIALNPLVGDVIPGADGARKVRWSRSGSGKSS 60
          M T+IETP FQ+  +++W  DER AFI+W+A NPL GDVIPG  G RKVRWSR+G GK  
Sbjct: 7  MYTIIETPIFQRYADEIWRNDEREAFINWLADNPLAGDVIPGTSGLRKVRWSRAGMGKRG 66

Query: 61 GARVIYFNLTEQEVVLLVTAYAKAE 85
          G+RVIY+NL +   + L+ AY KA+
Sbjct: 67 GSRVIYYNLLDDGEIWLLIAYTKAK 91