BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1597.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_986766.1| putative DNA methylase [Acidovorax sp. JS42] >g... 364 8e-99 ref|ZP_06490180.1| putative DNA methylase [Xanthomonas campestri... 357 9e-97 ref|YP_745336.1| DNA modification methyltransferase-like protein... 346 2e-93 ref|YP_003643255.1| putative DNA methylase [Thiomonas intermedia... 342 3e-92 ref|YP_363896.1| putative DNA methylase [Xanthomonas campestris ... 337 6e-91 >ref|YP_986766.1| putative DNA methylase [Acidovorax sp. JS42] gb|ABM42690.1| putative DNA methylase [Acidovorax sp. JS42] Length = 928 Score = 364 bits (934), Expect = 8e-99, Method: Composition-based stats. Identities = 173/243 (71%), Positives = 198/243 (81%), Gaps = 1/243 (0%) Query: 3 GGQEFIKGVSRFCFWISEEDIPEASKSEELRRRFKRVSESRLSSPKKATAEWHSKPFRFV 62 G EFI GV R C W+ + D A ++ L RRF V + R S + ATA+ S PFRF Sbjct: 685 GSDEFINGVERRCIWVDDSDYVRAKANKWLSRRFDSVEDKRRKSSRAATAKLCSVPFRFG 744 Query: 63 EIRSPQYDEAMVIPIVSSENRPYLPIGFLPRRSIV-NYAFGMYDAPLWNMALIASRLHLV 121 E+R + A+++P VSSE+R YLP+GF P +I+ N AF +YDAPLWN+ALIASRLHLV Sbjct: 745 EVRQSGTETAILVPSVSSESREYLPVGFAPSGAIISNLAFALYDAPLWNLALIASRLHLV 804 Query: 122 WIATVCGKMKTDFRYSNTLGWNTFPVPMLTEKNKADLTRCAEDILLAREHHFPATIADLY 181 WIATVCGK++T +RYSNTLGWNTFPVP LTEKNK DLTRCAEDILLAREHHFPATIADLY Sbjct: 805 WIATVCGKLETRYRYSNTLGWNTFPVPTLTEKNKTDLTRCAEDILLAREHHFPATIADLY 864 Query: 182 DPDAMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAASPAKGKKRTA 241 DP+ MPADLRAAH+RNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTA+A+PAKGKKR A Sbjct: 865 DPEKMPADLRAAHDRNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTASAAPAKGKKRKA 924 Query: 242 GAN 244 GAN Sbjct: 925 GAN 927 >ref|ZP_06490180.1| putative DNA methylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 924 Score = 357 bits (916), Expect = 9e-97, Method: Composition-based stats. Identities = 169/243 (69%), Positives = 203/243 (83%), Gaps = 1/243 (0%) Query: 3 GGQEFIKGVSRFCFWISEEDIPEASKSEELRRRFKRVSESRLSSPKKATAEWHSKPFRFV 62 G +E I G R+CFWI ++++ A+ SE + +R K V E+R +SP ++T + KP RFV Sbjct: 681 GSEELINGKLRYCFWIEDDEVDAANASEFIAQRLKLVVENRSNSPAESTRGFAKKPHRFV 740 Query: 63 EIRSPQYDEAMVIPIVSSENRPYLPIGFLPRRSIV-NYAFGMYDAPLWNMALIASRLHLV 121 +I + A+V+P VSSE+R YLP+GF+ +IV + AF +YDAPLWNMA IASRLHLV Sbjct: 741 QIAGTAKETAIVVPKVSSESREYLPVGFVTADTIVSDLAFALYDAPLWNMAFIASRLHLV 800 Query: 122 WIATVCGKMKTDFRYSNTLGWNTFPVPMLTEKNKADLTRCAEDILLAREHHFPATIADLY 181 WIATVCGK++T +RYSNT+GWNTFPVP LT+KNKADLTRCAEDILLAREHHFPATIAD+Y Sbjct: 801 WIATVCGKLETRYRYSNTIGWNTFPVPTLTDKNKADLTRCAEDILLAREHHFPATIADMY 860 Query: 182 DPDAMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAASPAKGKKRTA 241 DP+ MPADLRAAH+RNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTA+A+PAKGKKR A Sbjct: 861 DPENMPADLRAAHDRNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTASAAPAKGKKRKA 920 Query: 242 GAN 244 GAN Sbjct: 921 GAN 923 >ref|YP_745336.1| DNA modification methyltransferase-like protein [Granulibacter bethesdensis CGDNIH1] gb|ABI62413.1| DNA modification methyltransferase-related protein [Granulibacter bethesdensis CGDNIH1] Length = 938 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 170/229 (74%), Positives = 193/229 (84%) Query: 1 MFGGQEFIKGVSRFCFWISEEDIPEASKSEELRRRFKRVSESRLSSPKKATAEWHSKPFR 60 ++G QEFIKG+ R+CFW+ + DI A +S++L RRF RV+E R S K ATA W +KP R Sbjct: 681 IYGAQEFIKGIQRYCFWVQDHDIENARRSKDLVRRFDRVAEYRRQSVKAATAAWATKPHR 740 Query: 61 FVEIRSPQYDEAMVIPIVSSENRPYLPIGFLPRRSIVNYAFGMYDAPLWNMALIASRLHL 120 FVEIRS Y A+++P VSSE R YLP G LP RSIV AF +YDAPLWNMALIASRLHL Sbjct: 741 FVEIRSRDYTSAIIVPRVSSEGRDYLPTGLLPPRSIVTEAFALYDAPLWNMALIASRLHL 800 Query: 121 VWIATVCGKMKTDFRYSNTLGWNTFPVPMLTEKNKADLTRCAEDILLAREHHFPATIADL 180 VWIATVCGK++T +RYSNTLGWNTFPVP LTEKNKADLTRCAE+ILLARE HFPATIA+L Sbjct: 801 VWIATVCGKLETRYRYSNTLGWNTFPVPTLTEKNKADLTRCAEEILLAREAHFPATIAEL 860 Query: 181 YDPDAMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTA 229 Y+P MPADLRAAHERNDEVLERIYIGRRF+NDTERLEKLF LYT+MTA Sbjct: 861 YNPANMPADLRAAHERNDEVLERIYIGRRFRNDTERLEKLFALYTEMTA 909 >ref|YP_003643255.1| putative DNA methylase [Thiomonas intermedia K12] gb|ADG30925.1| putative DNA methylase [Thiomonas intermedia K12] Length = 936 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 164/242 (67%), Positives = 193/242 (79%), Gaps = 2/242 (0%) Query: 1 MFGGQEFIKGVSRFCFWISEEDIPEASKSEELRRRFKRVSESRLSSPKKATAEWHSKPFR 60 ++G EFI+G++R+C WI + + EA + +R R + V RL+S + ++ + Sbjct: 685 IYGSAEFIRGLARYCLWIEDAYLEEAMGIDAIRHRIEGVRVMRLASRDSGAQQMAARAHQ 744 Query: 61 FVEIRSPQYDEAMVIPIVSSENRPYLPIGFLPRRS-IVNYAFGMYDAPLWNMALIASRLH 119 E+ Q+ + +V+P VSSE+R YLP+G + S + N AF +YDAPLWNMALIASRLH Sbjct: 745 MREMNIGQF-QTIVMPGVSSESRTYLPVGLVDNNSSVTNLAFALYDAPLWNMALIASRLH 803 Query: 120 LVWIATVCGKMKTDFRYSNTLGWNTFPVPMLTEKNKADLTRCAEDILLAREHHFPATIAD 179 LVWIATVCGK+KTDFRYSNTLGWNTFPVP LTEKNKADLTRCAEDILL REHHFPATIAD Sbjct: 804 LVWIATVCGKLKTDFRYSNTLGWNTFPVPTLTEKNKADLTRCAEDILLTREHHFPATIAD 863 Query: 180 LYDPDAMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAASPAKGKKR 239 LYDP+ MPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAA+PAKG KR Sbjct: 864 LYDPETMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAAAPAKGSKR 923 Query: 240 TA 241 A Sbjct: 924 KA 925 >ref|YP_363896.1| putative DNA methylase [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ23842.1| putative DNA methylase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 926 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 167/252 (66%), Positives = 193/252 (76%), Gaps = 17/252 (6%) Query: 1 MFGGQEFIKGVSRFCFWISEEDIPEASKSEELRRRFKRVSESRLSSPKKATAEWHSKPFR 60 + G EFI+G+ R+C WI ++ + EA L +R + V + RL+ K A R Sbjct: 683 IVGSAEFIRGLERYCLWIEDQHLAEAQAILPLAQRIRGVRDLRLNGGKTA---------R 733 Query: 61 FVEIRSPQY-------DEAMVIPIVSSENRPYLPIGFLPRRSIV-NYAFGMYDAPLWNMA 112 + RS Q+ + +V+P VSSE+R YLP G+ P ++V N AF +YDAPLWNMA Sbjct: 734 DIAERSHQFQRMFIGKNSTLVVPSVSSESREYLPCGYEPAGTVVSNLAFALYDAPLWNMA 793 Query: 113 LIASRLHLVWIATVCGKMKTDFRYSNTLGWNTFPVPMLTEKNKADLTRCAEDILLAREHH 172 LIASRLHLVWIA+VCGKMKTDFRYSNTLGWNTFPVP LTEKNKADLTRCAE+ILLAREHH Sbjct: 794 LIASRLHLVWIASVCGKMKTDFRYSNTLGWNTFPVPTLTEKNKADLTRCAEEILLAREHH 853 Query: 173 FPATIADLYDPDAMPADLRAAHERNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTAAAS 232 FPATIADLY PD MPADLR AH+RNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTA+ + Sbjct: 854 FPATIADLYAPDGMPADLRTAHDRNDEVLERIYIGRRFKNDTERLEKLFDLYTKMTASVA 913 Query: 233 PAKGKKRTAGAN 244 PAKGKKR GAN Sbjct: 914 PAKGKKRKVGAN 925