BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1588.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum serope...   277   4e-73
ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungi...   231   2e-59
ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae ...   228   2e-58
ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. ...   228   3e-58
ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenico...   227   5e-58

>ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63701.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 149

 Score =  277 bits (708), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 145/149 (97%), Positives = 149/149 (100%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS
Sbjct: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
           ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHY+KGR+KCDIGLAK
Sbjct: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYNKGRIKCDIGLAK 120

Query: 121 GKKQHDKRETEKQRDTQREIQSAMKQHRR 149
           GKKQHDKRETEKQRD+QREIQ+AMKQHRR
Sbjct: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149


>ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331]
 gb|AEK61186.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331]
          Length = 149

 Score =  231 bits (590), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 120/149 (80%), Positives = 133/149 (89%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSIIDNKK F DYFIEERFEAG+ L GWEVKSIRAGR  LKEAYVIVRNGE+YLFG HIS
Sbjct: 1   MSIIDNKKVFHDYFIEERFEAGMELHGWEVKSIRAGRANLKEAYVIVRNGEIYLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
           AL S S+HVHPE  RTRKLLL+A EI KLI KVERSGYTLVP+NLHY +GR+KC+IGLAK
Sbjct: 61  ALLSASSHVHPEAVRTRKLLLHAEEIKKLIVKVERSGYTLVPINLHYLRGRIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDTQREIQSAMKQHRR 149
           GKKQHDKR+TE+QRD +RE+Q+AMKQHRR
Sbjct: 121 GKKQHDKRDTERQRDGEREVQAAMKQHRR 149


>ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32018.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
          Length = 149

 Score =  228 bits (581), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 119/149 (79%), Positives = 132/149 (88%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           M+I+DN+KAF DYF+EERFEAGL LQGWE KSIRAGRVQLKEAYVIVRN EV+LFG HIS
Sbjct: 1   MTIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
           ALTSTSTHVHPE TRTRKLLL+AAEI K+I KVERSGYTLVP+NLHY  GR+K ++GLAK
Sbjct: 61  ALTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVGGRIKLEVGLAK 120

Query: 121 GKKQHDKRETEKQRDTQREIQSAMKQHRR 149
           GKKQHDKR TE+ RD QRE+  AMK HRR
Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTHRR 149


>ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. Marseille]
 gb|ABR89249.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille]
          Length = 149

 Score =  228 bits (580), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 117/149 (78%), Positives = 131/149 (87%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSI+DN+KAF DYFIEERFEAG+VLQGWE KSIRAGRVQLKEAYVIVRN E++LFG HIS
Sbjct: 1   MSIVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
            L + STH+ P+  RTRKLLL + EI KL  KVERSGYTLVPLNLHY +G +KC+IGLAK
Sbjct: 61  PLATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHYQRGYIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDTQREIQSAMKQHRR 149
           GKKQHDKR+TEKQRDTQREIQS MKQ+RR
Sbjct: 121 GKKQHDKRDTEKQRDTQREIQSVMKQNRR 149


>ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
 emb|CAL61528.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
          Length = 149

 Score =  227 bits (578), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 117/149 (78%), Positives = 131/149 (87%)

Query: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60
           MSI+DN+KAF DYFIEERFEAG+VLQGWEVK+IRAGR QLKEAYVIVRN E++LFG HIS
Sbjct: 1   MSIVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRVKCDIGLAK 120
            L S STHV P+  RTRKLLL A EI KL  KVER+GYTLVPLNLHY KG +KC+IGLAK
Sbjct: 61  PLASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHYQKGYIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDTQREIQSAMKQHRR 149
           GKKQHDKR++EKQRDTQREIQ+ MKQ+RR
Sbjct: 121 GKKQHDKRDSEKQRDTQREIQAVMKQNRR 149