BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1587.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillu... 537 e-150 ref|YP_371823.1| TPR repeat-containing protein [Burkholderia sp.... 216 6e-54 ref|ZP_02468397.1| TPR repeat protein [Burkholderia thailandensi... 201 4e-49 gb|EGW61901.1| glycosyl transferase family 9 [Dechlorosoma suill... 198 2e-48 ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillu... 196 1e-47 >ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63700.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 343/524 (65%), Positives = 394/524 (75%), Gaps = 2/524 (0%) Query: 1 MNAPDPATLAGIMGLMCEAIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENG 60 MN+PDPATLA +MGLMC+AIALRGA Q AALAALDQAL LD FLP+ MQRA LLQE G Sbjct: 1 MNSPDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG 60 Query: 61 DLPAAAAAYQACLDLLPDYDEARVAHRAVLLQWADALQARLLQEGARPVDQRVLLARLYH 120 LP A AA ACLDL PDYDEAR HR++L +WA + + EGA + LAR Sbjct: 61 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL 120 Query: 121 QLDQPHAALSAIEPALP--LPALEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIA 178 QLDQP AL+A+E AL L ALHADILLRLNRHEEAL CYP A ED+ARAL A Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 179 FNRADILRRMGRIEAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRI 238 FN ADILRRMGRIE AQA +E+ALRWH DFP+A+VGR HMLL++ +AEGWR HEARF I Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 239 PELARRAIATPSPCWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPA 298 ELARR I +P P W+ GE + GK +LLW+EQGQGD LQFARY+PLVA QAA+V+LCAPA Sbjct: 241 AELARRGIDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPA 300 Query: 299 GLLAVLAPSFAQVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQ 358 LLAVLAP QVRC+A+ EA HD HASLLSLP LL LP P Q P +PYL P R+Q Sbjct: 301 SLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQ 360 Query: 359 QWQQRLAETAAASPRRPRIGLAWAGRQYATPHPSRDVPLAEWLPLFELPVEVVSLQVEIP 418 QWQ L+ A PRRPR+G+AWAGRQYAT H SRD+PL PL+ LP + VSLQVE+P Sbjct: 361 QWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVP 420 Query: 419 LADQDVHQELSGRLRTFPLADWADSAALACALDLVISVDTAVVHLAGALGLPCFLPQRLE 478 DQ H L+ RL T L DWAD+AAL CALDLVISVDTAVVHLAGALG+PC LP R + Sbjct: 421 AGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYD 480 Query: 479 GEWRWGVQGEQTAWYPSVRLFRQQQRGQWGSVVEEIVAACRERF 522 GEWRWGV+G QT WYPS++L RQ++RGQWG VVEE++A C +R Sbjct: 481 GEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRL 524 >ref|YP_371823.1| TPR repeat-containing protein [Burkholderia sp. 383] gb|ABB11179.1| TPR repeat protein [Burkholderia sp. 383] Length = 740 Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 170/498 (34%), Positives = 234/498 (46%), Gaps = 12/498 (2%) Query: 27 QPAAALAALDQALRLDAGFLPVLMQRASLLQENGDLPAAAAAYQACLDLLPDYDEARVAH 86 +P AL A ++A+ D + VL A L+ G A A + L PD+ A + Sbjct: 242 RPGEALDAFNEAIAADPARIDVLYNSAVALERLGRADEALARCERVLSFDPDHVRAHASR 301 Query: 87 RAVLLQWA---DALQARLLQEGARPVDQRVLLAR--LYHQLDQPHAALSAIEPALPLPAL 141 LLQ DAL A P L R L + AL++ + AL A Sbjct: 302 GNALLQLKRHDDALVAYARALALDPHSAETLCNRGTALRYLKRYDDALASYDAALARDAR 361 Query: 142 EDQAL--HADILLRLNRHEEALRCYPDDAAEDEARALIAFNRADILRRMGRIEAAQAGYE 199 +A + +L L+R++EA+ A A NR ++ R + A A Y+ Sbjct: 362 FAEAWTNRSSVLQDLHRYDEAMASLDRALALRPDHATNWLNRGNLHFETARTDDALASYD 421 Query: 200 EALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRIPELARRAIATPSPCWQHGESL 259 A+ D+ +A R + L GDFA GW E+E R R +LAR P WQ L Sbjct: 422 RAIALQPDYAEAHFARASLYLIEGDFARGWPEYEWRLRDAQLARHYRPFTQPAWQGDTPL 481 Query: 260 SGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLAPSFAQVRCVAHVSE 319 G+ +L+ +EQG GD L F RY+PLVAA+ A+V L A++A +A Sbjct: 482 DGRTVLIHAEQGFGDTLHFCRYVPLVAARGARVVFEVQPQLRALMASLSGAAHVIARGEP 541 Query: 320 AGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQQWQQRLAETAAASPRRPRIGL 379 DC A LLSLP+ + + YL DP R +QW L E RRPRIG+ Sbjct: 542 LPAFDCQAPLLSLPHAFRTDEATIPHAGAYLHADPQRTRQWDALLGER-----RRPRIGI 596 Query: 380 AWAGRQYATPHPSRDVPLAEWLPLFELPVEVVSLQVEIPLADQDVHQELSGRLRTFPLAD 439 AWAG +R + + PLF+L V+ +SLQ + D+ + R L D Sbjct: 597 AWAGNPEHRNDHNRSIDFSWLAPLFDLDVDWISLQKPVRERDEALLAGAPVRRVDDELGD 656 Query: 440 WADSAALACALDLVISVDTAVVHLAGALGLPCFLPQRLEGEWRWGVQGEQTAWYPSVRLF 499 +AD+AAL ALDLVI+VD+AV HLAGALG ++ EWRW + WYPS RLF Sbjct: 657 FADTAALIGALDLVIAVDSAVAHLAGALGHAVWVLLPDPAEWRWMRTRGDSPWYPSARLF 716 Query: 500 RQQQRGQWGSVVEEIVAA 517 RQ G W ++ + AA Sbjct: 717 RQAVPGDWTGAIDAVRAA 734 >ref|ZP_02468397.1| TPR repeat protein [Burkholderia thailandensis MSMB43] Length = 546 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 175/519 (33%), Positives = 249/519 (47%), Gaps = 38/519 (7%) Query: 2 NAPDPATLAGIMGLMCEAIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENGD 61 NA A+ + + +IAL G+ ALA ++AL ++ L R + G Sbjct: 53 NAAIAASPGFVDAIFNSSIALDQLGRYDDALARCERALAIEPRHARALANRGNAASHLGR 112 Query: 62 LPAAAAAYQACLDLLPDYDEARVAHRAVLLQWADAL-QARLLQEGARPVDQRVLLARLYH 120 A +Y LD+ PD VL +A AL + ++ R D+ + LA Sbjct: 113 HGDAVDSYARALDVEPD-------SVGVLCNYASALMRVDRHRDAHRACDRALALAP--- 162 Query: 121 QLDQPHAALSAIEPALPLPALEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIAFN 180 PHA+L+ A + L +R++EAL A L F+ Sbjct: 163 --HDPHASLT----------------RARVRLETHRYDEALDDLTRAIAVAPREKLAHFH 204 Query: 181 RADILRRMGRIEAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRIPE 240 R + LR + R E A+ Y +A+ D+ A R + L+ GDF GW E+E R+R + Sbjct: 205 RGNALRALRRHEEARQAYADAIDIDPDYAPAHCMRAFLCLSIGDFEAGWAEYEWRWRDSQ 264 Query: 241 L--ARRAIATPSPCWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPA 298 L +RR A P W G + G+ ILL+ EQG GD LQF RY+P V A A+V + AP Sbjct: 265 LDGSRRDFAQPR--WTRGMPIDGRTILLYHEQGLGDTLQFCRYVPRVKALGARVVVEAPV 322 Query: 299 GLLAVLAPSFAQVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQ 358 L + A VA P D H LLSLP L S PYL+ DP+R++ Sbjct: 323 ELKTLFATLDGVDALVARGEPLPPFDLHCPLLSLPLELRTDLSSIPADVPYLRADPVRVE 382 Query: 359 QWQQRLAETAAASPRRPRIGLAWAGRQYATPHPSRDVPLAEWLPLFELPVEVVSLQVEIP 418 +W+ RL + +PR+GL W+G +R + LA+ LPL + + VSLQ + Sbjct: 383 RWRMRLGASG-----QPRVGLVWSGNPLHVNDRNRSMTLADLLPLLDDRYDWVSLQKVMR 437 Query: 419 LADQDVHQELSGRLRTFPLADWADSAALACALDLVISVDTAVVHLAGALGLPCFLPQRLE 478 D+ R LAD+AD+AAL A+D VISVDT+V HLAGALG P + Sbjct: 438 DDDRPALDASPVRFVGDELADFADTAALVEAMDAVISVDTSVAHLAGALGRPLAVMLPHT 497 Query: 479 GEWRWGVQGEQTAWYPSVRLFRQQQRGQWGSVVEEIVAA 517 ++RW + + + WYP RLFRQ + G+W SVVE + A Sbjct: 498 PDFRWLLDRDDSPWYPGARLFRQPEGGEWASVVERVRGA 536 >gb|EGW61901.1| glycosyl transferase family 9 [Dechlorosoma suillum PS] Length = 516 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 193/507 (38%), Positives = 249/507 (49%), Gaps = 22/507 (4%) Query: 9 LAGIMGLMCEAIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENGDLPAAAAA 68 L I+ L+ + +LR G+ AAL L QAL ++ P+ + A L+ E G A AA Sbjct: 7 LEQIIALVGRSASLRQEGRTEAALGCLQQALAVNPRLYPLHLNCARLMAELGCYEEAIAA 66 Query: 69 YQACLDLLPDYDEARVAHRAVLLQWADALQARLLQEGARPVDQRVLLARLYHQLDQPHAA 128 Y L PD EA R L Q A+ LL+ VD VL + + AA Sbjct: 67 YGRYLRDAPDDGEAAAQCRQ-LQQEAEEHYGTLLEIDRDNVDFHVLRGNIRLGAGRAAAA 125 Query: 129 LSAIEPALPLP--ALEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIAFNRADILR 186 L+ + A L +A L L RHEEAL + + R +L+ Sbjct: 126 LADFDQARRLDPRCWGLEARRGAALAALYRHEEALAALDRALEREPGNLQVRLQRGRVLQ 185 Query: 187 RMGRIEAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRIPELARRAI 246 +GR EAA A YE+ L +H D P+A V + H G + GW+ +E R+ ++A + Sbjct: 186 ALGRWEAAFASYEQLLCFHLDHPEALVEQAHCCFALGRWRAGWQRYEWRWETRQMADAWL 245 Query: 247 ATPSPCWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLAP 306 + +P W S G+ +LLW+EQG GD LQF RY+P VAA A+V L P L A+ A Sbjct: 246 PSTAPLWLGRHSPEGRTVLLWAEQGLGDTLQFLRYVPRVAALGARVLLLLPPSLAALAAS 305 Query: 307 SFAQVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQQWQQRLAE 366 + + + PHD H LLSLP L L P + P PYL+ P E Sbjct: 306 LGPGIEILLMGGDLPPHDLHCPLLSLPLALGLCRPEEGPGTPYLRASP-----------E 354 Query: 367 TAAASPRRP-----RIGLAWAGRQYATPHPSRDVPLAEWLPLFELPVEVVSLQVEIPLAD 421 AA P P RIGL W+ + A R++ LA+ PL LQ IP AD Sbjct: 355 HAARMPVLPAFQGRRIGLVWSAK--ADGDAGRNLALAQLQPLLGPGRRFYCLQQMIPAAD 412 Query: 422 QDVHQELSGRLRTFP-LADWADSAALACALDLVISVDTAVVHLAGALGLPCFLPQRLEGE 480 Q+ L R L DWAD+AAL LDLVISVDTAV HLAGALG PC+L + GE Sbjct: 413 QEALAALPQLQRVDEWLEDWADTAALVQQLDLVISVDTAVAHLAGALGRPCWLLLQHGGE 472 Query: 481 WRWGVQGEQTAWYPSVRLFRQQQRGQW 507 WRWG QGE T WY S+RLFRQ G W Sbjct: 473 WRWGRQGEATPWYASLRLFRQPAWGDW 499 >ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ65058.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 174/531 (32%), Positives = 237/531 (44%), Gaps = 38/531 (7%) Query: 19 AIALRGAGQPAAALAALDQALRLDAGFLPVLMQRASLLQENGDLPAAAAAYQACLDLLPD 78 A AL G+ A+A D L ++A F+ L+ R + L+ G A A + L PD Sbjct: 83 AGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNREALADLERATALAPD 142 Query: 79 YDEARVAHRAVL---LQWADALQARLLQEGARP--VDQRVLLARLYHQLDQPHAALSAIE 133 +A VL + DA ++ RP ++ L +Q AL A + Sbjct: 143 NADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYD 202 Query: 134 PALPLPA--LEDQALHADILLRLNRHEEALRCYPDDAAEDEARALIAFNRADILRRMGRI 191 AL + E + +L ++ R EAL+ Y A DE + FNR L ++ R Sbjct: 203 RALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRF 262 Query: 192 EAAQAGYEEALRWHADFPQAQVGRGHMLLTRGDFAEGWREHEARFRIPELARRAIATPSP 251 E A Y A D A M L +GDF GW+ E R+ ++ + P Sbjct: 263 EEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQP 322 Query: 252 CWQHGESLSGKHILLWSEQGQGDCLQFARYLPLVAAQAAQVTLCAPAGLLAVLA--PSFA 309 W + L GK ILL +EQG GD LQF RY PL+AA+ A+V L L LA P Sbjct: 323 LWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGLPGVT 382 Query: 310 QVRCVAHVSEAGPHDCHASLLSLPYLLDLPHPSQAPSAPYLKVDPIRLQQWQQRLAETAA 369 QV H P D H L+SLP + P APYL + W QRL Sbjct: 383 QVIGTDHFMRP-PFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLPRN-- 439 Query: 370 ASPRRPRIGLAWAGRQYATPHP-------SRDVPLAEWLPLFELPVEVVSLQVEIPLADQ 422 R R+GL WAG A HP R +P A PL EL E +L+ Sbjct: 440 ---RALRVGLVWAGSS-AQTHPDAVRIDGERSLPFATLAPLVELAREHAALE----FYSL 491 Query: 423 DVHQELSGRLRTFPLA-----------DWADSAALACALDLVISVDTAVVHLAGALGLPC 471 V Q+ +L PLA D+A++ AL LDL+I+VDT+V HLAGALG P Sbjct: 492 QVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPV 551 Query: 472 FLPQRLEGEWRWGVQGEQTAWYPSVRLFRQQQRGQWGSVVEEIVAACRERF 522 +L R G WRW V+ E + WY + +F Q+ GQW V+ + AA +++ Sbjct: 552 WLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQL 602