BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1584.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775607.1| two component response regulator protein [He... 429 e-118 ref|YP_004039724.1| winged helix family two component transcript... 310 2e-82 ref|YP_003051026.1| winged helix family two component transcript... 309 2e-82 ref|YP_283930.1| response regulator receiver:transcriptional reg... 306 1e-81 ref|YP_003847784.1| two component transcriptional regulator, win... 297 7e-79 >ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63699.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 220/229 (96%), Positives = 228/229 (99%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 MSKVLLIDDDVELV+MLKEYLEQEKFEVNVA+DGEAGAAEALTGQYAIAVLDVMMPRLNG Sbjct: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 VDTLRRIRAKS+MPVVMLTAKGDDTDRIIGLELGADDYVPKPC+PREIAARIRAILRRAS Sbjct: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 AE++EQ+PYSPLAVGALSMWPEQRRATWNG+PLELTSSEFNLLEVLARNAGKPVSKQ LS Sbjct: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE Sbjct: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 >ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 158/229 (68%), Positives = 188/229 (82%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+KVLLIDDDVELV MLKEYLEQE F+ VA+DGE+GA +AL Y + +LDVMMP++NG Sbjct: 8 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 +D LR IRA+ N PV+MLTAKG+D DRI+GLELGADDYVPKPCTPREI AR+RAILRR Sbjct: 68 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR-- 125 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 + S+ A + VGAL++WPEQRRA W+G LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 126 TQPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 185 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI A + + IQTVYR+GYQ ++E Sbjct: 186 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 234 >ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus glucosetrophus SIP3-4] Length = 227 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 158/229 (68%), Positives = 188/229 (82%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M+KVLLIDDDVELV MLKEYLEQE F+ VA+DGE+GA +AL Y + +LDVMMP++NG Sbjct: 1 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 +D LR IRA+ N PV+MLTAKG+D DRI+GLELGADDYVPKPCTPREI AR+RAILRR Sbjct: 61 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR-- 118 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 + S+ A + VGAL++WPEQRRA W+G LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 119 TQPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 178 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI A + + IQTVYR+GYQ ++E Sbjct: 179 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 227 >ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 226 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 150/229 (65%), Positives = 181/229 (79%), Gaps = 3/229 (1%) Query: 1 MSKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 M +LL+DDDVEL ML++YL Q+ FE HDGE+G EAL+G YAI LDVMMP ++G Sbjct: 1 MPHILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISG 60 Query: 61 VDTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRAS 120 ++ LRRIRA SN+PV+MLTAKGDD DRI+GLELGADDYVPKPC PRE+AAR+RAILRR + Sbjct: 61 IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120 Query: 121 AESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLS 180 +A P+ G L+++PEQRR W G P+++TS+EFNL+EVLARNAG+PVSK L Sbjct: 121 L---VEAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLC 177 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 EQ LGRPLARFDR+IDVHLSSIR K+ L +SCIQTVYR GYQ IKE Sbjct: 178 EQALGRPLARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQLIKE 226 >ref|YP_003847784.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gb|ADL56020.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 234 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 155/228 (67%), Positives = 182/228 (79%), Gaps = 1/228 (0%) Query: 2 SKVLLIDDDVELVEMLKEYLEQEKFEVNVAHDGEAGAAEALTGQYAIAVLDVMMPRLNGV 61 +KVLL+DDDVEL ML+ YLE+E FEV HDGE+G EAL G + IAVLDVMMP +G+ Sbjct: 8 TKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKSGI 67 Query: 62 DTLRRIRAKSNMPVVMLTAKGDDTDRIIGLELGADDYVPKPCTPREIAARIRAILRRASA 121 D L +IRA+ MPV+MLTA+GDD DRIIGLELGADDYVPKPCTPRE+ ARIRAILRR+S Sbjct: 68 DVLVQIRAQGAMPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRRSSG 127 Query: 122 ESSEQAPYSPLAVGALSMWPEQRRATWNGRPLELTSSEFNLLEVLARNAGKPVSKQTLSE 181 S + + +A G LS+WPEQRRA W G+PLELTS+EFNLLEVLARNAG+ VSK LSE Sbjct: 128 AESALSSSTVIA-GVLSIWPEQRRAEWAGKPLELTSTEFNLLEVLARNAGQVVSKSELSE 186 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 Q LGRPLARFDR+IDVHLSSIR+K+ L +S I V+ GYQFI+E Sbjct: 187 QALGRPLARFDRSIDVHLSSIRRKLEPLPDGRSRILAVFNKGYQFIRE 234