BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1583.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775606.1| two component sensor histidine kinase [Herba... 790 0.0 ref|YP_004693865.1| integral membrane sensor signal transduction... 374 e-101 ref|YP_003847783.1| integral membrane sensor signal transduction... 373 e-101 ref|YP_004039725.1| histidine kinase [Methylovorus sp. MP688] >g... 330 5e-88 ref|YP_003051027.1| histidine kinase [Methylovorus glucosetrophu... 329 8e-88 >ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63698.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 473 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 413/473 (87%), Positives = 439/473 (92%), Gaps = 1/473 (0%) Query: 63 VGRLFWKFFFFIAIAQITATFGVGVLFWIENLERSNRNSEIDLSPPASFMIRAAAATLQF 122 +GRLFWKFFFFIAIAQITATFGVGVLFW+ENLERSNRNSEIDLSPPASFMIR+AAATLQF Sbjct: 1 MGRLFWKFFFFIAIAQITATFGVGVLFWVENLERSNRNSEIDLSPPASFMIRSAAATLQF 60 Query: 123 GGPEALRSLINEGRPHRLQLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVELVK 182 GG EALRSLINEGRPHRLQLYA+DEDN+DLMGREVSP LVEQA+ +LATER+RRVVE VK Sbjct: 61 GGTEALRSLINEGRPHRLQLYALDEDNKDLMGREVSPKLVEQAKHILATERERRVVERVK 120 Query: 183 AANGHSYLMFIPTPNDEFGPPPGGMPGREPRYMKDRGGPKPLFFPTMPIAVALVASLVFA 242 A NGHSYLMFIP PNDEFGP REP + +RG PK +FFPTMPI VAL+ASLVFA Sbjct: 121 APNGHSYLMFIPAPNDEFGPGGPPGGAREPHRIGERG-PKSMFFPTMPIVVALLASLVFA 179 Query: 243 LLLAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLGRDFDAMTAKLRTLME 302 LLLAWYFSHPI HLKNAFNQAANGNLD LEPVMSARNDELADLGRDFD MTAKLRTLME Sbjct: 180 LLLAWYFSHPIGHLKNAFNQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLME 239 Query: 303 SQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKLVGELLTLS 362 SQRRLLHDVSHELRSPIARLQ+AIGLARVQDKDKL+LTLERIERESVRMDKLVGELLTLS Sbjct: 240 SQRRLLHDVSHELRSPIARLQVAIGLARVQDKDKLDLTLERIERESVRMDKLVGELLTLS 299 Query: 363 RLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRIDCRVQVKGNPELLYRAIE 422 RLEANVPGSMEE IAI+AML DM NDASFEAEA+GK V+ ++DCRVQVKGNPELLYRAIE Sbjct: 300 RLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLYRAIE 359 Query: 423 NVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSILDRGPGVPEEEMDSIFELFFRSSRTKS 482 NVLRNAIKHTAP T VQ ++DE+NKLLHLSILDRGPGVPEEEM+SIFELFFRSSRTKS Sbjct: 360 NVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFRSSRTKS 419 Query: 483 NSAGHGLGLSIARRIVEAHQGFIRAANRSDGGLRVDITLPFMADEPARGDTAE 535 NS+GHGLGLSIARRIVEAHQGFI+AANRS+GGLRVDITLPFMADEPARGDT E Sbjct: 420 NSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPARGDTVE 472 >ref|YP_004693865.1| integral membrane sensor signal transduction histidine kinase [Nitrosomonas sp. Is79A3] gb|AEJ00466.1| integral membrane sensor signal transduction histidine kinase [Nitrosomonas sp. Is79A3] Length = 447 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 220/460 (47%), Positives = 300/460 (65%), Gaps = 20/460 (4%) Query: 63 VGRLFWKFFFFIAIAQITATFGVGVLFWIENLERSNRNSEIDLSPPASFMIRAAAATLQF 122 +GRLFWKFF F +AQIT GVGV W+ RS ++ PP+ + AAA TL++ Sbjct: 1 MGRLFWKFFIFFWLAQITTFIGVGVAMWL----RSPGMEQLRAPPPSG--VAAAALTLRY 54 Query: 123 GGPEALRSLINE-GRPHRLQLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVELV 181 GG EALR L+ E R ++AVDE+N+D++GR VS ++ QA ++ ++ + E V Sbjct: 55 GGREALRGLLREQSREPAPPVFAVDENNRDILGRPVSEAMLAQASQIAGSQNNFGRAEKV 114 Query: 182 KAANGHSYLMFIPTPNDEFGPPPGGMPGREPRYMKDRGGPKPLFFPTMPIAVALVASLVF 241 A+G++YL+F P+ G PG + R M+ + + P MP+ V SL F Sbjct: 115 TDADGYAYLLFAPSL---------GYPGLD-RRMEPPPHDRGMLPPVMPLLAGGVVSLFF 164 Query: 242 ALLLAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLGRDFDAMTAKLRTLM 301 A LAWYFS PIR L+ AF +NG LD L PVM R DEL+DLGRDFD+M +L+ LM Sbjct: 165 AAWLAWYFSKPIRTLRAAFAAVSNGLLDVRLAPVMGNRRDELSDLGRDFDSMVQRLQQLM 224 Query: 302 ESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKLVGELLTL 361 + QRR+LHDVSHELRSP+ARLQ AIGLAR Q ++ E ++ RIERE+VRMD LV ELLTL Sbjct: 225 DGQRRVLHDVSHELRSPLARLQAAIGLAR-QQPERTEDSMMRIEREAVRMDILVSELLTL 283 Query: 362 SRLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRIDCRVQVKGNPELLYRAI 421 SRLEA++ G + E + + +++++ DA FEA A G RVE V+GN ELL+RA+ Sbjct: 284 SRLEADMIGKLNEQVDLNELVSNVVEDARFEAAASGCRVEFEARSGAIVRGNAELLHRAV 343 Query: 422 ENVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSILDRGPGVPEEEMDSIFELFFRSSRTK 481 ENV+RNA+KH+ + I+ ++ + + +LD G GVPE ++ SIFE FFRS + K Sbjct: 344 ENVVRNAVKHSPSGGLIGIKIRINS-DQTIFIYVLDEGTGVPEADIQSIFEPFFRSDKKK 402 Query: 482 SNSAGHGLGLSIARRIVEAHQGFIRAANRSDGGLRVDITL 521 + S GHGLGL+IA+R++ AHQG I A+NR GGL + ITL Sbjct: 403 T-SDGHGLGLAIAKRVITAHQGEIYASNRPSGGLCIIITL 441 >ref|YP_003847783.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] gb|ADL56019.1| integral membrane sensor signal transduction histidine kinase [Gallionella capsiferriformans ES-2] Length = 447 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 224/468 (47%), Positives = 303/468 (64%), Gaps = 34/468 (7%) Query: 63 VGRLFWKFFFFIAIAQITATFGVGVLFWIEN--LERSNRNSEIDLSPPASFMIRAAAATL 120 +GRLFWKFF F +AQ+T+ GVG W+ + +ER P S + AAA+TL Sbjct: 1 MGRLFWKFFIFFWLAQVTSVIGVGGAMWLRSPGMER--------FRAPQSSAVAAAASTL 52 Query: 121 QFGGPEALRSLINE-GRPHRLQLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVE 179 ++GGPEALR L+ E R ++AVDE+N+D++GR VS ++ QA ++ ++ + E Sbjct: 53 RYGGPEALRWLLREQSREPAPSVFAVDENNRDILGRPVSETMLVQANQIRGSQDNFGSAE 112 Query: 180 LVKAANGHSYLMFIPTP-----NDEFGPPPGGMPGREPRYMKDRGGPKPLFFPTMPIAVA 234 V AA+GH+YL+F P + PPP DRG + P MP+ Sbjct: 113 KVAAADGHTYLLFAQPPSYPRLDGRMEPPP-----------HDRG----MLPPVMPLLAG 157 Query: 235 LVASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDQALEPVMSARNDELADLGRDFDAMT 294 V SL FA LLAWYFS PIR L+ AF +NG LD L PVM +R DEL+DLGRDFD+M Sbjct: 158 GVVSLFFAALLAWYFSKPIRTLRAAFAAVSNGLLDVRLAPVMGSRRDELSDLGRDFDSMV 217 Query: 295 AKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKDKLELTLERIERESVRMDKL 354 +L+ LM+ QRR+LHDVSHELRSP+ARLQ AIGLAR Q +++E ++ RIERE+VRMD L Sbjct: 218 QRLQQLMDGQRRVLHDVSHELRSPLARLQAAIGLAR-QQPERIEDSMMRIEREAVRMDTL 276 Query: 355 VGELLTLSRLEANVPGSMEEAIAIQAMLADMTNDASFEAEALGKRVESRIDCRVQVKGNP 414 V ELLTLSRLEA + G + E + + +++D+ DA FEA A G RVE R V+GN Sbjct: 277 VSELLTLSRLEAGMMGKLNEQVDLNELVSDVAEDARFEAAASGCRVEIEALSRAIVRGNA 336 Query: 415 ELLYRAIENVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSILDRGPGVPEEEMDSIFELF 474 ELL+RA+ENV+RNA+KH+ P + + N+ + +++ D+G GVPE + +IFE F Sbjct: 337 ELLHRAVENVVRNAVKHS-PSGGLVAIKMQKNHNQTICITVSDQGGGVPEADSYAIFEPF 395 Query: 475 FRSSRTKSNSAGHGLGLSIARRIVEAHQGFIRAANRSDGGLRVDITLP 522 FRS++TK+ S GHGLGL+IA+R++ AHQG I A N GGL + I LP Sbjct: 396 FRSAQTKA-SDGHGLGLAIAQRVIIAHQGEIYARNHPGGGLCITINLP 442 >ref|YP_004039725.1| histidine kinase [Methylovorus sp. MP688] gb|ADQ84489.1| histidine kinase [Methylovorus sp. MP688] Length = 484 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 205/492 (41%), Positives = 292/492 (59%), Gaps = 39/492 (7%) Query: 63 VGRLFWKFFFFIAIAQITATFGVGVLFWIENLERSNRNSEIDLSPPASFMIRAAAATLQF 122 +GRL+WKFFFF AQ+T+ FGVG+ W N N S I+ SPPA ++ A +ATL+ Sbjct: 1 MGRLYWKFFFFFLFAQLTSVFGVGLAVWAHNRSLENSRSLIEASPPAMSVLAAVSATLEH 60 Query: 123 GGPEALRSLINEGRPHRL--QLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVEL 180 GG A R ++ EG P R Q+Y V+E +DL+ R VSP L++ A L + V Sbjct: 61 GGVGATRKML-EGWPQRRMPQIYVVNEAGEDLLQRRVSPELLQLAISQLDKDE---AVRS 116 Query: 181 VKAANGHSYLMFIPT-------------------------PNDEFGPPPGGMPGREPRYM 215 + A +GH Y++F+P+ P+D PPPG G P Sbjct: 117 IHADDGHEYILFVPSRSRGGQPPPNEGMGHPDGPPPDMHDPSDMHQPPPGERAGDGP--- 173 Query: 216 KDRGGPKPLF---FPTMPIAVALVASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDQAL 272 GG + F FP +P++ ++ASLVFA LLAWYFS PIR L+ AF A +G+L+ + Sbjct: 174 PPNGGMRSRFWRVFPLVPLSAGVIASLVFAALLAWYFSKPIRSLRQAFITATDGDLEVRV 233 Query: 273 EPVMSARNDELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQ 332 M R DEL+DLGRDFD M ++L L++ Q RLLH VSHELRSP+AR+QMAIGLAR Q Sbjct: 234 AGSMGHRRDELSDLGRDFDTMASRLGALLQGQSRLLHHVSHELRSPLARMQMAIGLAR-Q 292 Query: 333 DKDKLELTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEAIAIQAMLADMTNDASFE 392 +K+ +LERIERES+RMDKLVGELL SRLE+ V +E + + +L + DA FE Sbjct: 293 SPEKVSSSLERIERESIRMDKLVGELLAFSRLESGVTNIHKERVDLSDLLFTLAEDAQFE 352 Query: 393 AEALGKRVESRIDCRVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEVNKLLH 452 + V ++ P+LL+RA+EN++RNA+K+ + V D +++ Sbjct: 353 GKDRKMEVRLLPHDDFVLEAQPDLLHRALENIVRNALKYGPDGSDVDIDVSSDPATRMVL 412 Query: 453 LSILDRGPGVPEEEMDSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIRAANRSD 512 + I D+G GV E+++IF+ F+R++ + S GHG+GL++A+++VE H G I A N S Sbjct: 413 IRIRDQGMGVAPHELETIFQPFYRAN-SGLGSDGHGIGLALAKQVVEMHGGKIAARNISP 471 Query: 513 GGLRVDITLPFM 524 G V + LP++ Sbjct: 472 VGFEVAVQLPYL 483 >ref|YP_003051027.1| histidine kinase [Methylovorus glucosetrophus SIP3-4] gb|ACT50500.1| histidine kinase [Methylovorus glucosetrophus SIP3-4] Length = 484 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 205/489 (41%), Positives = 292/489 (59%), Gaps = 33/489 (6%) Query: 63 VGRLFWKFFFFIAIAQITATFGVGVLFWIENLERSNRNSEIDLSPPASFMIRAAAATLQF 122 +GRL+WKFFFF AQ+T+ FGVG+ W N N S I+ SPPA ++ A +ATL+ Sbjct: 1 MGRLYWKFFFFFLFAQLTSVFGVGLAVWAHNRSLENSRSLIEASPPAMSVLAAVSATLEH 60 Query: 123 GGPEALRSLINEGRPHRL--QLYAVDEDNQDLMGREVSPHLVEQARRVLATERDRRVVEL 180 GG A R ++ EG P R Q+Y V+E +DL+ R VSP L++ A + ++D V Sbjct: 61 GGVGATRKML-EGWPQRRMPQIYVVNEAGEDLLQRRVSPELLQLA--ISQVDKDE-AVRS 116 Query: 181 VKAANGHSYLMFIPTPNDEFGPPPG---GMPGREPRYMKD-------------RGGPKP- 223 + A +GH Y++F+P + PPP G P P M D GP P Sbjct: 117 IHADDGHEYILFVPARSRGGQPPPNEGMGHPDGPPPDMHDPSDMHQPPPGERAEDGPPPN 176 Query: 224 --------LFFPTMPIAVALVASLVFALLLAWYFSHPIRHLKNAFNQAANGNLDQALEPV 275 FP +P++ ++ASLVFA LLAWYFS PIR L+ AF A +G+L+ + Sbjct: 177 GGMRSRFWRVFPLVPLSAGVIASLVFAALLAWYFSKPIRSLRQAFITATDGDLEVRVAGS 236 Query: 276 MSARNDELADLGRDFDAMTAKLRTLMESQRRLLHDVSHELRSPIARLQMAIGLARVQDKD 335 M R DEL+DLGRDFD M ++L L++ Q RLLH VSHELRSP+AR+QMAIGLAR Q + Sbjct: 237 MGHRRDELSDLGRDFDTMASRLGALLQGQSRLLHHVSHELRSPLARMQMAIGLAR-QSPE 295 Query: 336 KLELTLERIERESVRMDKLVGELLTLSRLEANVPGSMEEAIAIQAMLADMTNDASFEAEA 395 K+ +LERIERES+RMDKLVGELL SRLE+ V +E + + +L + DA FE + Sbjct: 296 KVSSSLERIERESIRMDKLVGELLAFSRLESGVTNIHKERVDLSDLLFTLAEDAQFEGKD 355 Query: 396 LGKRVESRIDCRVQVKGNPELLYRAIENVLRNAIKHTAPETAVQFVAEIDEVNKLLHLSI 455 V ++ P+LL+RA+EN++RNA+K+ + V D +++ + I Sbjct: 356 RKMEVRLLPHDDFVLEAQPDLLHRALENIVRNALKYGPDGSDVDIDVSSDPATRMVLIRI 415 Query: 456 LDRGPGVPEEEMDSIFELFFRSSRTKSNSAGHGLGLSIARRIVEAHQGFIRAANRSDGGL 515 D+G GV E+++IF+ F+R++ + S GHG+GL++A+++VE H G I A N S G Sbjct: 416 RDQGMGVAPHELETIFQPFYRAN-SGLGSDGHGIGLALAKQVVEMHGGKIAARNISPVGF 474 Query: 516 RVDITLPFM 524 V + LP++ Sbjct: 475 EVAVQLPYL 483