BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1580.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775603.1| transmembrane protein [Herbaspirillum serope...   218   3e-55
ref|NP_969472.1| hypothetical protein Bd2674 [Bdellovibrio bacte...   127   6e-28
ref|YP_583606.1| hypothetical protein Rmet_1454 [Cupriavidus met...   124   4e-27
ref|YP_001099653.1| hypothetical protein HEAR1353 [Herminiimonas...   120   9e-26
ref|YP_004752007.1| putative activity regulator of membrane prot...   119   2e-25

>ref|YP_003775603.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63695.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  218 bits (554), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 128/144 (88%), Positives = 137/144 (95%)

Query: 1   MTDWAIWLVLAGALLGAELFTGTFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           MTDWAIWLVLAG LLGAELFTGTFYLLMIALGLVAGA+AAWCGL+LEWQLLVAAVVGVAA
Sbjct: 2   MTDWAIWLVLAGGLLGAELFTGTFYLLMIALGLVAGAVAAWCGLVLEWQLLVAAVVGVAA 61

Query: 61  VLALRRSPYGRLRQSSANDDPNLLLDIGQSVEVPAWQVHGNQFMARVPYRGAQWDVELLP 120
           VL LR SPYGRLRQS++NDDP+LLLDIGQS+EV AWQ HG Q++ARVPYRGAQWDVELLP
Sbjct: 62  VLGLRSSPYGRLRQSNSNDDPSLLLDIGQSIEVTAWQAHGTQYLARVPYRGAQWDVELLP 121

Query: 121 GHHARPGSFVIREIRGSRLLVAPR 144
           GHHA PGS+VIREIRGSRLLVAPR
Sbjct: 122 GHHALPGSYVIREIRGSRLLVAPR 145


>ref|NP_969472.1| hypothetical protein Bd2674 [Bdellovibrio bacteriovorus HD100]
 emb|CAE80465.1| putative membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 140

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/142 (48%), Positives = 96/142 (67%), Gaps = 4/142 (2%)

Query: 1   MTDWAIWLVLAGALLGAELFTGTFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           M  W +W VLAG +LG EL TGTFYL++I++G+ A  I+A  G  +  Q ++AAV+ V  
Sbjct: 1   METWIMWFVLAGLVLGLELLTGTFYLVVISIGMAAAGISALLGANVSLQAIIAAVIWVVC 60

Query: 61  VLALRRSPYGRLRQSSANDDPNLLLDIGQSVEVPAWQVHGNQFMARVPYRGAQWDVELLP 120
            L LR+S +G+ R   +  DPN+ +DIGQ+++V AW    ++  AR  YRGA WDVEL+ 
Sbjct: 61  TLILRKSRFGKPRHVQSESDPNVNIDIGQTIKVDAWS---SENTARATYRGAMWDVELIS 117

Query: 121 GHHARPGSFVIREIRGSRLLVA 142
           G  A  G+FVIRE+RG+RL VA
Sbjct: 118 G-EASAGTFVIREVRGNRLFVA 138


>ref|YP_583606.1| hypothetical protein Rmet_1454 [Cupriavidus metallidurans CH34]
 gb|ABF08337.1| conserved hypothetical protein; putative exported protein
           [Cupriavidus metallidurans CH34]
          Length = 144

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 3/142 (2%)

Query: 1   MTDWAIWLVLAGALLGAELFTGTFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           MT + +W  +A  L+ AEL TGTFYLLMIALG+ AG +AA  G     Q + AA+V +  
Sbjct: 1   MTSYYLWFAVAVVLVIAELATGTFYLLMIALGVAAGGVAALLGADEPIQTVAAALVAIIG 60

Query: 61  VLALRRSPYGRLRQSSANDDPNLLLDIGQSVEVPAWQVHGNQFMARVPYRGAQWDVELLP 120
           ++ LRR+ +G+LR+  A  +P++ LDIGQ +EVPAW    +   ARVPYRGA W VEL P
Sbjct: 61  IVLLRRTRFGKLRRRDAASNPDVNLDIGQELEVPAWD---DSRRARVPYRGADWTVELAP 117

Query: 121 GHHARPGSFVIREIRGSRLLVA 142
           G   +PG + I E+RG+ L+VA
Sbjct: 118 GAEPKPGRYRIVEVRGATLIVA 139


>ref|YP_001099653.1| hypothetical protein HEAR1353 [Herminiimonas arsenicoxydans]
 emb|CAL61526.1| Conserved hypothetical protein; putative membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 150

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/142 (50%), Positives = 93/142 (65%), Gaps = 1/142 (0%)

Query: 1   MTDWAIWLVLAGALLGAELFTGTFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           MTDW IW  +A  L+  E+ TGTFYLLMIA+G + G I A  G    WQ ++AAV+   A
Sbjct: 1   MTDWMIWFAVACVLIILEMATGTFYLLMIAIGAITGGIVALSGASGTWQCILAAVIAAVA 60

Query: 61  VLALRRSPYGRLRQSSANDDPNLLLDIGQSVEVPAWQ-VHGNQFMARVPYRGAQWDVELL 119
             ALRRS +GR     A+ DP++ LDIGQ++EV  W+ V G +  ARV YRGA WDVEL 
Sbjct: 61  TFALRRSRFGRTENPDASRDPDVNLDIGQTLEVAEWRTVSGAKSTARVMYRGAPWDVELA 120

Query: 120 PGHHARPGSFVIREIRGSRLLV 141
            G  A  G F I+E++G+RL+V
Sbjct: 121 SGGTAVAGQFRIQEVQGNRLIV 142


>ref|YP_004752007.1| putative activity regulator of membrane protease YbbK [Collimonas
           fungivorans Ter331]
 gb|AEK61184.1| Putative activity regulator of membrane protease YbbK [Collimonas
           fungivorans Ter331]
          Length = 150

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/144 (53%), Positives = 93/144 (64%), Gaps = 2/144 (1%)

Query: 1   MTDWAIWLVLAGALLGAELFTGTFYLLMIALGLVAGAIAAWCGLMLEWQLLVAAVVGVAA 60
           M  W +W++ AG L+  ELFT T YLLM+A+GL  G +AA  G  +EWQLLVAAVV + A
Sbjct: 1   MAGWVMWMLAAGLLVVMELFTTTLYLLMVAIGLAVGGVAALIGWGVEWQLLVAAVVALVA 60

Query: 61  VLALRRSPYGRLRQSSANDDPNLLLDIGQSVEVPAWQVHGNQ--FMARVPYRGAQWDVEL 118
              LRRS +GR  +  A  DPN+ LDIGQS+ V  WQ       + ARV YRGA WDVEL
Sbjct: 61  TYLLRRSKFGRRTKVQAERDPNVNLDIGQSITVEQWQQDAGAAGYTARVKYRGAMWDVEL 120

Query: 119 LPGHHARPGSFVIREIRGSRLLVA 142
            P  +A  G F I EIRGSRL+V 
Sbjct: 121 APTANADGGLFFIHEIRGSRLIVG 144