BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1577.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_05342203.1| conserved hypothetical protein [Thalassiobium... 63 1e-08 ref|YP_004152739.1| hypothetical protein Varpa_0406 [Variovorax ... 62 3e-08 ref|YP_001843469.1| hypothetical protein LAF_0653 [Lactobacillus... 60 1e-07 ref|ZP_03944795.1| conserved hypothetical protein [Lactobacillus... 58 4e-07 ref|ZP_07280754.1| conserved hypothetical protein [Streptomyces ... 58 5e-07 >ref|ZP_05342203.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gb|EET47870.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 138 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 9/142 (6%) Query: 14 DYFLGEWIFSRTIWEASENPQATASGELSFTRGETPGQLVYREHGQLRMTSAPGRLIPFS 73 D F G W SR I +A+ Q+ +G F+ T QL YRE GQ MT G + + Sbjct: 5 DDFRGTWQVSRVIADAASGTQSLFAGIAEFSEQGT-DQLAYREQGQ--MTLPDGTTLAAT 61 Query: 74 RVFDYRFSADRLSVLFADGERVGQPYQDYLLRGQELIPAADHLCGPDCYTAVYTAHSEDS 133 R + + FS DR+ V F + GQP+ D+ +G E +HLC D Y Y + Sbjct: 62 RGYQWTFSKDRVWVGFEE----GQPFHDFSPQGHE--DGTEHLCINDLYRVRYDFAAFPV 115 Query: 134 FTMETTINGPKKRTRVRTEFSR 155 ++ + GP+K +R+ + R Sbjct: 116 WSATYRVTGPRKDYNLRSLYHR 137 >ref|YP_004152739.1| hypothetical protein Varpa_0406 [Variovorax paradoxus EPS] gb|ADU34628.1| hypothetical protein Varpa_0406 [Variovorax paradoxus EPS] Length = 155 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 12/145 (8%) Query: 14 DYFLGEWIFSRTIWEASENPQATASGELSFTRGETPGQLVYREHGQLRMTSAPGRLIPFS 73 D G W R I +AT +G F R + GQL YRE G++++ + G+ Sbjct: 19 DLLEGVWDLDRVI-----EGKATMAGTARFVRLDA-GQLKYREEGRIQLPN--GQAFDGH 70 Query: 74 RVFDYRFSADRLSVLFADGERVGQPYQDYLL--RGQELIPAADHLCGPDCYTAVYTAHSE 131 R + + S SV FA E + + D + G EL+ +A HLC D Y +VY ++ Sbjct: 71 REYVFERSPKGFSVFFA--EVPPRLFHDIAIVREGDELVGSAGHLCVADQYDSVYRFRAD 128 Query: 132 DSFTMETTINGPKKRTRVRTEFSRR 156 SF +E + GP+K RT F RR Sbjct: 129 GSFVIEHLVKGPRKDYLSRTVFKRR 153 >ref|YP_001843469.1| hypothetical protein LAF_0653 [Lactobacillus fermentum IFO 3956] ref|ZP_05864555.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] dbj|BAG26989.1| hypothetical protein [Lactobacillus fermentum IFO 3956] gb|EEX25007.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN] Length = 146 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 21/154 (13%) Query: 12 MADYFLGEWIFSRTIWEASENPQATASGELSFTRGETPGQLVYREHGQLRM--TSAPGRL 69 + DYF G+W + T S AT G F+ +P L+ E+G++ M T+AP Sbjct: 3 LYDYFWGDWQLTGTS-HNSTGTAATMHGTWRFSP-LSPDSLLLTENGEMIMGKTAAP--- 57 Query: 70 IPFSRVFDYRFSADRLSVLFADGERVGQP------YQDYLL--RGQELIPAADHLCGPDC 121 + F R + Y+F+ DR+ V F D QP YQ Y L G L+P +LC D Sbjct: 58 LSFWREYRYQFAGDRVLVYFHD-----QPSGNYELYQAYRLDENGHLLVPDNTYLCALDT 112 Query: 122 YTAVYTAHSEDSFTMETTINGPKKRTRVRTEFSR 155 Y A + + F T +NGP+K R+ E R Sbjct: 113 YDARFELDNA-HFAQHTWVNGPQKDYRLDKELQR 145 >ref|ZP_03944795.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] gb|EEI22167.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931] Length = 146 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 21/154 (13%) Query: 12 MADYFLGEWIFSRTIWEASENPQATASGELSFTRGETPGQLVYREHGQLRM--TSAPGRL 69 + DYFLG+W + T T G F+ +P L+ E+G++ M T+AP Sbjct: 3 LYDYFLGDWQLTGTS-RILTGHATTMHGTWRFSP-LSPDSLLLTENGEMIMGKTAAP--- 57 Query: 70 IPFSRVFDYRFSADRLSVLFADGERVGQP------YQDYLL--RGQELIPAADHLCGPDC 121 + F R + Y+F+ DR+ V F D QP YQ Y L G L+P +LC D Sbjct: 58 LSFWREYRYQFAGDRVLVYFHD-----QPSGNYELYQAYRLDENGHLLVPDNTYLCALDT 112 Query: 122 YTAVYTAHSEDSFTMETTINGPKKRTRVRTEFSR 155 Y A + + F T +NGP+K R+ E R Sbjct: 113 YDARFELDNA-HFAQHTWVNGPQKDYRLDKELQR 145 >ref|ZP_07280754.1| conserved hypothetical protein [Streptomyces sp. AA4] gb|EFL09123.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 167 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 64/153 (41%), Gaps = 13/153 (8%) Query: 3 AFPPIDLAAMADYFLGEWIFSRTIWEASENPQATASGELSFTRGETPGQLVYREHGQLRM 62 FP DL YF GEW +R I + ASG +FT + G LVY E G+L++ Sbjct: 22 GFPINDLTG---YFSGEWQLAREIVDVDGAAMGEASGRATFTSDD--GVLVYHESGELQL 76 Query: 63 TSAPGRLIPFSRVFDYRFSADRLSVLFADGERVGQPYQDYLLRGQELIPAADHLCGPDCY 122 + G PF R YR + + + D G + D L E ADH C D Y Sbjct: 77 GAHRG---PFVRTLHYRPAGGSRAAVHFDH---GGFFHDLDLATGEW--TADHPCAADWY 128 Query: 123 TAVYTAHSEDSFTMETTINGPKKRTRVRTEFSR 155 Y + E + GP K + + F+R Sbjct: 129 RGAYRVLDHRRWEQEWVVTGPAKDHVITSRFTR 161