BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1576.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum ...   174   5e-42
ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacte...   131   3e-29
ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Hermin...   129   2e-28
ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp....   127   5e-28
ref|YP_001765307.1| tRNA/rRNA methyltransferase SpoU [Burkholder...   119   2e-25

>ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 263

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 94/101 (93%), Positives = 97/101 (96%)

Query: 1   MGAHFVLDIFENADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSPA 60
           MGAHFVLDI E+ADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVS A
Sbjct: 163 MGAHFVLDIVEDADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAA 222

Query: 61  LQDAATHEVVIPHLGEMESLNVAAAAAVCLFEQLRQRTVGR 101
           LQ+AAT EVVIPHLG+MESLNVAAAAAVCLFEQLRQRT GR
Sbjct: 223 LQEAATQEVVIPHLGQMESLNVAAAAAVCLFEQLRQRTAGR 263


>ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 262

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 76/100 (76%)

Query: 1   MGAHFVLDIFENADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSPA 60
           MGAHF+L IFEN DL  +   + +P+LATSSH AQ +YD DL+ PVAWL GHEGQGV   
Sbjct: 163 MGAHFLLKIFENVDLAEVVRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQ 222

Query: 61  LQDAATHEVVIPHLGEMESLNVAAAAAVCLFEQLRQRTVG 100
           L   ATH+V IPH+G MESLNVAA AAVC FEQ+RQR+ G
Sbjct: 223 LLALATHQVAIPHIGAMESLNVAACAAVCFFEQVRQRSAG 262


>ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 79/98 (80%)

Query: 1   MGAHFVLDIFENADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSPA 60
           MGAHF+++IFEN DL AL A + IP++ATSSHA + +YD DL+ PVAWL GHEGQGV+  
Sbjct: 165 MGAHFLMEIFENVDLEALIARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEH 224

Query: 61  LQDAATHEVVIPHLGEMESLNVAAAAAVCLFEQLRQRT 98
           L   ATH++ IPHLG +ESLNVAA++AVC FEQ+RQ T
Sbjct: 225 LLALATHQITIPHLGAIESLNVAASSAVCFFEQVRQIT 262


>ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 76/98 (77%)

Query: 1   MGAHFVLDIFENADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSPA 60
           MGAHF+L+IFE  DL  L   + IP++ATSSHA + +Y+ DL  PVAWL GHEGQGV+  
Sbjct: 165 MGAHFLLEIFEGVDLSDLLGRADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADD 224

Query: 61  LQDAATHEVVIPHLGEMESLNVAAAAAVCLFEQLRQRT 98
           L   ATH + IPHLG++ESLNVAA++AVC FEQLRQRT
Sbjct: 225 LLARATHRISIPHLGDIESLNVAASSAVCFFEQLRQRT 262


>ref|YP_001765307.1| tRNA/rRNA methyltransferase SpoU [Burkholderia cenocepacia MC0-3]
 gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
          Length = 260

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/97 (62%), Positives = 72/97 (74%)

Query: 1   MGAHFVLDIFENADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSPA 60
           MGAHF+L I E+ +  AL     +P+  T SH AQ +YDCDLSGPVAW+ G+EG GVS  
Sbjct: 161 MGAHFLLSIHEDVEAEALAERLDVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAF 220

Query: 61  LQDAATHEVVIPHLGEMESLNVAAAAAVCLFEQLRQR 97
            +DAATH V IP  G MESLNVAAAAAVCLFEQ+RQ+
Sbjct: 221 WRDAATHRVTIPQPGGMESLNVAAAAAVCLFEQVRQQ 257