BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1575.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum ser... 365 2e-99 ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Mars... 293 1e-77 ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter... 291 5e-77 ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxyda... 286 1e-75 ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium ... 273 2e-71 >ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 197/204 (96%), Positives = 202/204 (99%) Query: 6 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEA 65 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKL+EA Sbjct: 1 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEA 60 Query: 66 ARDSLALEIKESALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 125 ARDSLALEIK SALAWA+ASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC Sbjct: 61 ARDSLALEIKASALAWAVASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 120 Query: 126 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALLVLHDTYPHYGFDRHKGYPTPLHLE 185 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAAL+VLHDTYPHYGFDRHKGYPTPLHLE Sbjct: 121 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLE 180 Query: 186 MLRLHGVSPVHRKSYAPVRALLNA 209 MLRLHGVSPVHR+SYAPV+ALL A Sbjct: 181 MLRLHGVSPVHRRSYAPVKALLTA 204 >ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] sp|A6SZN7|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 153/202 (75%), Positives = 171/202 (84%), Gaps = 1/202 (0%) Query: 6 MPKAAPQTLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEA 65 M K P L+LF +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GLRDSKKL+E Sbjct: 1 MKKEDPN-LSLFSFLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59 Query: 66 ARDSLALEIKESALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRC 125 RD+LA+EIK+ AL+W+IA C+E+EID LNIL A+MLAMRRA+E L +PTLALIDGNRC Sbjct: 60 KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119 Query: 126 PVMSIRSEAIVKGDDKVPAISAASILAKTARDAALLVLHDTYPHYGFDRHKGYPTPLHLE 185 PV S+RSEAI+KGDDKV AISAASILAKTARD AL +LH YPHY FD+HKGYPT LHLE Sbjct: 120 PVTSVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179 Query: 186 MLRLHGVSPVHRKSYAPVRALL 207 LR HGVSPVHRKSYAPVRALL Sbjct: 180 RLREHGVSPVHRKSYAPVRALL 201 >ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter331] gb|AEK61177.1| Ribonuclease HII [Collimonas fungivorans Ter331] Length = 209 Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 155/188 (82%), Positives = 166/188 (88%) Query: 20 YTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEAARDSLALEIKESAL 79 Y GE ICGVDEAGRGPLAGPVFAAAVILDPARPV GLRDSKKL+ R+ LA +IK +AL Sbjct: 13 YDGETICGVDEAGRGPLAGPVFAAAVILDPARPVSGLRDSKKLTAERRELLAGQIKANAL 72 Query: 80 AWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSEAIVKGD 139 AWAIA C+E EID LNIL A+MLAMRRAVE LS LPTLALIDGNRCP +SIRSEAIVKGD Sbjct: 73 AWAIAECSEVEIDTLNILQATMLAMRRAVEGLSMLPTLALIDGNRCPQLSIRSEAIVKGD 132 Query: 140 DKVPAISAASILAKTARDAALLVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRKS 199 DKV AISAASILAKTARDAAL +LH+ YPHY FD+HKGYPT LH+E LRLHGVSPVHRKS Sbjct: 133 DKVQAISAASILAKTARDAALQLLHEQYPHYAFDQHKGYPTALHMERLRLHGVSPVHRKS 192 Query: 200 YAPVRALL 207 YAPVRALL Sbjct: 193 YAPVRALL 200 >ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] sp|A4G4T5|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 150/195 (76%), Positives = 166/195 (85%) Query: 14 LALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEAARDSLALE 73 L+LF +IICGVDEAGRGPLAGPVFAAAVILDP RP+ GL DSKKLSE RD+LA++ Sbjct: 9 LSLFSSLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLSEVRRDALAID 68 Query: 74 IKESALAWAIASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSE 133 IK AL+W+IA C+EQEID LNIL A+MLAMRRAVE L PTLALIDGNRCPVM +R+E Sbjct: 69 IKAHALSWSIAQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGNRCPVMVVRAE 128 Query: 134 AIVKGDDKVPAISAASILAKTARDAALLVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVS 193 AI+KGDDKV AISAASILAKTARD AL +LH YPHY FD+HKGYPT LHLE LR HGVS Sbjct: 129 AIIKGDDKVQAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALHLERLREHGVS 188 Query: 194 PVHRKSYAPVRALLN 208 PVHRKSYAPVRALL+ Sbjct: 189 PVHRKSYAPVRALLD 203 >ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 146/186 (78%), Positives = 161/186 (86%) Query: 25 ICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLSEAARDSLALEIKESALAWAIA 84 +CGVDEAGRGPLAGPVFAAAVILDPA P+ GLRDSKKL+EA RD+LA+EIK ALAW+IA Sbjct: 1 MCGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIA 60 Query: 85 SCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRSEAIVKGDDKVPA 144 C+ EID +NIL AS+LAM+RAV+ L T PTLALIDGNRCPVM++RS AIV GDDKV A Sbjct: 61 ECSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPVMTVRSIAIVGGDDKVDA 120 Query: 145 ISAASILAKTARDAALLVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGVSPVHRKSYAPVR 204 ISAASILAKTARDAAL+VLH YP Y FDRHKGYPT LHLE LRLHGVSPVHR+SYAPVR Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180 Query: 205 ALLNAG 210 LL G Sbjct: 181 RLLQEG 186