BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1570.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775594.1| transmembrane protein [Herbaspirillum serope... 221 3e-56 ref|YP_004751995.1| outer membrane chaperone Skp [Collimonas fun... 189 2e-46 ref|YP_001119754.1| outer membrane chaperone Skp [Burkholderia v... 164 6e-39 ref|ZP_08275638.1| Outer membrane protein H precursor [Oxalobact... 154 3e-36 ref|YP_002981312.1| outer membrane chaperone Skp [Ralstonia pick... 152 1e-35 >ref|YP_003775594.1| transmembrane protein [Herbaspirillum seropedicae SmR1] emb|CAM32574.1| Transmembrane protein [Herbaspirillum seropedicae] gb|ADJ63686.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 163/169 (96%), Positives = 165/169 (97%) Query: 1 MTKSFLSLQTIVMAACLLSFAPAHAQESSKIAFVSTERIFREAAPAKAAQTKLETEFAKR 60 MTKSFLSLQT+VMAACL S APAHAQESSKIAFVSTERIFREAAPAKAAQ+KLE EFAKR Sbjct: 1 MTKSFLSLQTVVMAACLFSLAPAHAQESSKIAFVSTERIFREAAPAKAAQSKLEAEFAKR 60 Query: 61 DRDLQDMAARLKAQSDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRN 120 DRDLQDMAARLK QSDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRN Sbjct: 61 DRDLQDMAARLKTQSDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRN 120 Query: 121 EELAVVLERTNKVIRQIAEAEKYDIVFQEAVYASKRIDITDKVLKELAK 169 EELAVVLERTNKVIRQIAEAEKYDIVFQEAVYASKRIDITDKVLKELAK Sbjct: 121 EELAVVLERTNKVIRQIAEAEKYDIVFQEAVYASKRIDITDKVLKELAK 169 >ref|YP_004751995.1| outer membrane chaperone Skp [Collimonas fungivorans Ter331] gb|AEK61172.1| outer membrane chaperone Skp [Collimonas fungivorans Ter331] Length = 199 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 124/171 (72%), Positives = 145/171 (84%), Gaps = 2/171 (1%) Query: 1 MTKSFLSLQTI-VMAACLLSFAPAHAQESSKIAFVSTERIFREAAPAKAAQTKLETEFAK 59 + K+F SL T ++A CLLS APA A E SKIAFVS+ERI REA PAKAAQ+K+E EF+K Sbjct: 29 LIKTFTSLPTAGLLAVCLLSAAPARADEGSKIAFVSSERILREATPAKAAQSKIEAEFSK 88 Query: 60 RDRDLQDMAARLKAQSDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRR 119 RD+DLQD A RLK +DKLDKD+AV+S+++R KRQR+LSDLDK+FQRKQREFREDLNQRR Sbjct: 89 RDKDLQDQATRLKGMADKLDKDSAVISETERIKRQRELSDLDKDFQRKQREFREDLNQRR 148 Query: 120 NEELAVVLERTNKVIRQIAEAEKYDIVFQE-AVYASKRIDITDKVLKELAK 169 NEELA+VLER+ K I+QIAEAEKYD+VFQE VY S RIDITDKVLK L K Sbjct: 149 NEELAIVLERSTKAIKQIAEAEKYDMVFQEGGVYVSPRIDITDKVLKILNK 199 >ref|YP_001119754.1| outer membrane chaperone Skp [Burkholderia vietnamiensis G4] gb|ABO54919.1| outer membrane chaperone Skp (OmpH) [Burkholderia vietnamiensis G4] Length = 175 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 110/154 (71%), Positives = 130/154 (84%) Query: 15 ACLLSFAPAHAQESSKIAFVSTERIFREAAPAKAAQTKLETEFAKRDRDLQDMAARLKAQ 74 A L A AHAQ+ ++IA V+++RI RE+APAKAAQTKLE EFAKRD+DLQD+AARLK+ Sbjct: 17 ALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDLAARLKSM 76 Query: 75 SDKLDKDAAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRNEELAVVLERTNKVI 134 SD LDK+ A LS +DRA++QRDL+ LD +FQRKQREFREDLNQRRNEELA VLER NKVI Sbjct: 77 SDSLDKNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLERANKVI 136 Query: 135 RQIAEAEKYDIVFQEAVYASKRIDITDKVLKELA 168 +QIAE + YD++ QEAVY S RIDITDKVLK LA Sbjct: 137 KQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALA 170 >ref|ZP_08275638.1| Outer membrane protein H precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF30884.1| Outer membrane protein H precursor [Oxalobacteraceae bacterium IMCC9480] Length = 150 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 112/147 (76%), Positives = 134/147 (91%), Gaps = 1/147 (0%) Query: 23 AHAQESSKIAFVSTERIFREAAPAKAAQTKLETEFAKRDRDLQDMAARLKAQSDKLDKDA 82 AHAQES +I FV+TERIFREA PAK AQ K++ EF+KR+++LQ++AARLKA S+KLDKD Sbjct: 5 AHAQES-RIGFVNTERIFREATPAKTAQVKIDQEFSKREKELQEVAARLKAMSEKLDKDV 63 Query: 83 AVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRNEELAVVLERTNKVIRQIAEAEK 142 AV+S+SDR++RQR+L+DLDK+FQRKQREFREDLNQR+NEELA VLERT +VI+QIAEAEK Sbjct: 64 AVISESDRSRRQRELTDLDKDFQRKQREFREDLNQRKNEELASVLERTTRVIKQIAEAEK 123 Query: 143 YDIVFQEAVYASKRIDITDKVLKELAK 169 YDIVFQ+AVYAS RIDITDKVLK L K Sbjct: 124 YDIVFQDAVYASPRIDITDKVLKALNK 150 >ref|YP_002981312.1| outer membrane chaperone Skp [Ralstonia pickettii 12D] gb|ACS62640.1| outer membrane chaperone Skp (OmpH) [Ralstonia pickettii 12D] Length = 183 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 109/146 (74%), Positives = 128/146 (87%), Gaps = 1/146 (0%) Query: 22 PAHAQESSKIAFVSTERIFREAAPAKAAQTKLETEFAKRDRDLQDMAARLKAQSDKLDKD 81 PA AQE+ +IA V++ERI R++ PAKAAQ KLETEFAKRDR+LQDMAA+LK SDKLDKD Sbjct: 33 PATAQEA-RIAAVNSERILRDSQPAKAAQAKLETEFAKRDRELQDMAAKLKGMSDKLDKD 91 Query: 82 AAVLSDSDRAKRQRDLSDLDKEFQRKQREFREDLNQRRNEELAVVLERTNKVIRQIAEAE 141 +AVL+DSDR +RQR+LSDLD++FQRKQREFREDLNQRRNEELA VLER N+VIR IAE Sbjct: 92 SAVLADSDRNRRQRELSDLDRDFQRKQREFREDLNQRRNEELAQVLERANRVIRSIAEQR 151 Query: 142 KYDIVFQEAVYASKRIDITDKVLKEL 167 KYD++ QEAVY + RIDITD+VLK L Sbjct: 152 KYDLIVQEAVYVNPRIDITDEVLKAL 177