BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1563.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775588.1| ribosome recycling factor [Herbaspirillum se... 283 7e-75 ref|YP_004751989.1| ribosome recycling factor [Collimonas fungiv... 258 4e-67 ref|ZP_08275644.1| Ribosome recycling factor [Oxalobacteraceae b... 251 3e-65 ref|YP_001353745.1| ribosome recycling factor [Janthinobacterium... 248 2e-64 ref|YP_001099638.1| ribosome recycling factor [Herminiimonas ars... 248 4e-64 >ref|YP_003775588.1| ribosome recycling factor [Herbaspirillum seropedicae SmR1] gb|ADJ63680.1| ribosome recycling factor (ribosome releasing factor) protein [Herbaspirillum seropedicae SmR1] Length = 186 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 173/186 (93%), Positives = 182/186 (97%) Query: 1 MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60 MSVADVKKN+EQKMAKSIETLKANLAKVRTGRAHTGLLDQVMV+YYGSPTGLSQVANLTL Sbjct: 1 MSVADVKKNSEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTL 60 Query: 61 IDARTIGVQPFEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120 IDARTIGVQP+EKKM AV+EKAIREADLGLNPATHG+LIRVPMP LTEERRKEMVKLVK Sbjct: 61 IDARTIGVQPYEKKMVAVVEKAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKG 120 Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKIASEDDERRGQDEIQKLTDKFVADIDKMVTDKE 180 EAEDAKIAVRNIRREGNE LKKLVKDK+ASEDDERRGQDEIQKLTDKFVA+IDK+V+DKE Sbjct: 121 EAEDAKIAVRNIRREGNESLKKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKE 180 Query: 181 KEVMTV 186 KEVMTV Sbjct: 181 KEVMTV 186 >ref|YP_004751989.1| ribosome recycling factor [Collimonas fungivorans Ter331] gb|AEK61166.1| Ribosome recycling factor [Collimonas fungivorans Ter331] Length = 186 Score = 258 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 153/186 (82%), Positives = 172/186 (92%) Query: 1 MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60 MS+ADVKKNT+Q+M KS+ETL+A+LAKVRTGRAHTG+LD +MVEYYGSPT LSQVAN+TL Sbjct: 1 MSIADVKKNTDQRMQKSLETLRADLAKVRTGRAHTGILDHIMVEYYGSPTNLSQVANVTL 60 Query: 61 IDARTIGVQPFEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120 IDARTIGVQPFEKKM AV+EKAIRE+DLGLNPAT G++IRVP P LTEERRKEMVKLVK Sbjct: 61 IDARTIGVQPFEKKMVAVVEKAIRESDLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKG 120 Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKIASEDDERRGQDEIQKLTDKFVADIDKMVTDKE 180 EAEDAKIA+RNIRR+ NEGLKKLVKDK SEDDERR QD+IQKLTDKFVA+IDK V DKE Sbjct: 121 EAEDAKIAIRNIRRDANEGLKKLVKDKECSEDDERRAQDDIQKLTDKFVAEIDKQVIDKE 180 Query: 181 KEVMTV 186 KE++TV Sbjct: 181 KEILTV 186 >ref|ZP_08275644.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] gb|EGF30890.1| Ribosome recycling factor [Oxalobacteraceae bacterium IMCC9480] Length = 186 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 146/186 (78%), Positives = 171/186 (91%) Query: 1 MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60 M++ DVKKNT+ +M KSIETLK +LAKVRTGRAH G+LD +MV+YYG+PT L+QVAN+TL Sbjct: 1 MTIVDVKKNTDVRMHKSIETLKTDLAKVRTGRAHVGMLDHIMVDYYGNPTQLTQVANVTL 60 Query: 61 IDARTIGVQPFEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120 +DART+GVQP+EKKM +V+EKAIR+ADLGLNP+T GDLIRVP PALTEERRKEMVKLVKS Sbjct: 61 VDARTLGVQPWEKKMVSVVEKAIRDADLGLNPSTQGDLIRVPTPALTEERRKEMVKLVKS 120 Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKIASEDDERRGQDEIQKLTDKFVADIDKMVTDKE 180 EAEDAKIA+RNIRR+ NEGLKKL+KDK SEDDERR QDEIQK+TDKFVA+IDK+V DKE Sbjct: 121 EAEDAKIAIRNIRRDANEGLKKLIKDKECSEDDERRAQDEIQKMTDKFVAEIDKLVVDKE 180 Query: 181 KEVMTV 186 KEV+TV Sbjct: 181 KEVLTV 186 >ref|YP_001353745.1| ribosome recycling factor [Janthinobacterium sp. Marseille] sp|A6SZP8|RRF_JANMA RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor gb|ABR89027.1| ribosome recycling factor [Janthinobacterium sp. Marseille] Length = 186 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 154/186 (82%), Positives = 169/186 (90%) Query: 1 MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60 M+VAD KK +QKM KSIETLKA+LAKVRTGRAHTG+LD VMVEYYG+PT LSQVAN+TL Sbjct: 1 MTVADAKKTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLSQVANVTL 60 Query: 61 IDARTIGVQPFEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120 IDARTIGVQPFEKKM AV+EKAIREADLGLNPAT G+LIRVP P LTEERRKEMVKLVKS Sbjct: 61 IDARTIGVQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKS 120 Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKIASEDDERRGQDEIQKLTDKFVADIDKMVTDKE 180 EAEDAKIAVRNIRR+ NE LKKLVK+K SED+ERR QDEIQKLTDKFV +IDK+V +KE Sbjct: 121 EAEDAKIAVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKLVVEKE 180 Query: 181 KEVMTV 186 KEV+TV Sbjct: 181 KEVLTV 186 >ref|YP_001099638.1| ribosome recycling factor [Herminiimonas arsenicoxydans] sp|A4G4S4|RRF_HERAR RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor emb|CAL61511.1| Ribosome recycling factor (Ribosome-releasing factor) (RRF) [Herminiimonas arsenicoxydans] Length = 186 Score = 248 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 150/186 (80%), Positives = 169/186 (90%) Query: 1 MSVADVKKNTEQKMAKSIETLKANLAKVRTGRAHTGLLDQVMVEYYGSPTGLSQVANLTL 60 M+VAD KK +QKM KSIETLKA+LAKVRTGRAHTG+LD VMVEYYG+PT L+QVAN+TL Sbjct: 1 MTVADAKKTADQKMQKSIETLKADLAKVRTGRAHTGILDHVMVEYYGNPTNLTQVANVTL 60 Query: 61 IDARTIGVQPFEKKMAAVIEKAIREADLGLNPATHGDLIRVPMPALTEERRKEMVKLVKS 120 IDARTIGVQPFEKKM AV+EKAIR+ADLGLNPAT G++IRVP P LTEERRKEMVKLVKS Sbjct: 61 IDARTIGVQPFEKKMVAVVEKAIRDADLGLNPATQGEMIRVPTPPLTEERRKEMVKLVKS 120 Query: 121 EAEDAKIAVRNIRREGNEGLKKLVKDKIASEDDERRGQDEIQKLTDKFVADIDKMVTDKE 180 EAEDAKIA+RNIRR+ NE LKKL+KDK SEDDERR QDEIQKLTDKFV ++DK+V +KE Sbjct: 121 EAEDAKIAIRNIRRDANETLKKLLKDKACSEDDERRAQDEIQKLTDKFVLEVDKLVVEKE 180 Query: 181 KEVMTV 186 KEV+TV Sbjct: 181 KEVLTV 186