BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1560.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum ser... 473 e-131 ref|YP_001353748.1| small subunit ribosomal protein S2 [Janthino... 449 e-124 ref|YP_004751986.1| 30S ribosomal protein S2p (SAe) [Collimonas ... 437 e-121 sp|A6SZQ1|RS2_JANMA RecName: Full=30S ribosomal protein S2 434 e-120 ref|ZP_04578265.1| 30S ribosomal subunit protein S2 [Oxalobacter... 425 e-117 >ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum seropedicae SmR1] emb|CAM32576.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae] gb|ADJ63677.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae SmR1] Length = 246 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 241/246 (97%), Positives = 245/246 (99%) Query: 17 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLS 76 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEA KYVRQLS Sbjct: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLS 60 Query: 77 ANRGTILFVGTKRQARDILSAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 136 ANRGTILFVGTKRQAR+IL+AEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAA+ Sbjct: 61 ANRGTILFVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAV 120 Query: 137 EDGSVEKLSKKEALLFTREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 196 EDGSVEKLSKKEALLF+REQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI Sbjct: 121 EDGSVEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180 Query: 197 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVKGDEF 256 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVKGDEF Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVKGDEF 240 Query: 257 VEVEQA 262 VEVEQA Sbjct: 241 VEVEQA 246 >ref|YP_001353748.1| small subunit ribosomal protein S2 [Janthinobacterium sp. Marseille] gb|ABR89244.1| small subunit ribosomal protein S2 [Janthinobacterium sp. Marseille] Length = 264 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 223/264 (84%), Positives = 251/264 (95%), Gaps = 2/264 (0%) Query: 1 MSRMTERIPDLTLEKFMSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEK 60 M+ +TER+PDL MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRN+IHIVNLEK Sbjct: 1 MNTVTERVPDLNPGDIMSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEK 60 Query: 61 TLGMYQEAVKYVRQLSANRGTILFVGTKRQARDILSAEAQRAGVPYVDQRWLGGMLTNFK 120 T+GMYQEA+KY+RQLS+NRGT+LFVGTKRQAR+ ++AEAQRAG+PYVDQRWLGGMLTNFK Sbjct: 61 TMGMYQEAMKYIRQLSSNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFK 120 Query: 121 TIKTSIKRLKDMEAAIEDGSVEKLSKKEALLFTREQEKLQKAIGGIKDMGGIPDAIFVID 180 TIKTSIKRLK+MEA+IEDGSV+KLSKKEAL+F RE+ KL+K+IGGIKDMGGIPDAIFV+D Sbjct: 121 TIKTSIKRLKEMEASIEDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVD 180 Query: 181 VGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 240 VGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDS+KAI LYARG+ADA+LEGR Sbjct: 181 VGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGR 240 Query: 241 ANAVNDVVEAVK-GDEFVEV-EQA 262 ANA ND+VE++K GD+FVEV EQA Sbjct: 241 ANATNDLVESIKGGDDFVEVSEQA 264 >ref|YP_004751986.1| 30S ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331] gb|AEK61163.1| SSU ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331] Length = 250 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 220/246 (89%), Positives = 236/246 (95%), Gaps = 3/246 (1%) Query: 17 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLS 76 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEA+KY+RQLS Sbjct: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAMKYIRQLS 60 Query: 77 ANRGTILFVGTKRQARDILSAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 136 +NRG ILFVGTKRQAR+I++AEA R+G P+VDQRWLGGMLTNFKTIKTSIKRLK+MEA+I Sbjct: 61 SNRGNILFVGTKRQAREIVAAEAARSGSPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120 Query: 137 EDGSVEKLSKKEALLFTREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 196 EDGSVEKLSKKE L+F RE KLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI Sbjct: 121 EDGSVEKLSKKEGLMFQRELIKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180 Query: 197 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVK---G 253 PVIGVVDTNHSP+GVTYVIPGNDDS+KAIALYARG+ADA+LEGRANAVNDVVEA+K G Sbjct: 181 PVIGVVDTNHSPDGVTYVIPGNDDSSKAIALYARGVADAILEGRANAVNDVVEAIKGAAG 240 Query: 254 DEFVEV 259 DEFVEV Sbjct: 241 DEFVEV 246 >sp|A6SZQ1|RS2_JANMA RecName: Full=30S ribosomal protein S2 Length = 248 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 216/248 (87%), Positives = 241/248 (97%), Gaps = 2/248 (0%) Query: 17 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLS 76 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRN+IHIVNLEKT+GMYQEA+KY+RQLS Sbjct: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLS 60 Query: 77 ANRGTILFVGTKRQARDILSAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 136 +NRGT+LFVGTKRQAR+ ++AEAQRAG+PYVDQRWLGGMLTNFKTIKTSIKRLK+MEA+I Sbjct: 61 SNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120 Query: 137 EDGSVEKLSKKEALLFTREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 196 EDGSV+KLSKKEAL+F RE+ KL+K+IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGI Sbjct: 121 EDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180 Query: 197 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVK-GDE 255 PVIGVVDTNHSPEGVTYVIPGNDDS+KAI LYARG+ADA+LEGRANA ND+VE++K GD+ Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRANATNDLVESIKGGDD 240 Query: 256 FVEV-EQA 262 FVEV EQA Sbjct: 241 FVEVSEQA 248 >ref|ZP_04578265.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] gb|EEO29238.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] Length = 246 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 209/244 (85%), Positives = 231/244 (94%) Query: 17 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLS 76 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTL MY +A+ Y+RQL+ Sbjct: 1 MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLAMYNDAMNYIRQLA 60 Query: 77 ANRGTILFVGTKRQARDILSAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 136 ANRGTIL VGTKRQARDI++AEAQRAG+P+VDQRWLGGMLTNFKTIKTSIKRLKDMEAAI Sbjct: 61 ANRGTILMVGTKRQARDIIAAEAQRAGMPFVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 120 Query: 137 EDGSVEKLSKKEALLFTREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 196 EDGSVEK+SKKE L+F+RE EKLQK+IGGIKDM G+PDAIFV+DVGYHKGAITEAAKLGI Sbjct: 121 EDGSVEKMSKKEGLMFSREVEKLQKSIGGIKDMNGLPDAIFVVDVGYHKGAITEAAKLGI 180 Query: 197 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGRANAVNDVVEAVKGDEF 256 PVIGVVDTNHSPEG+ YVIPGNDDS+KAI LYARG+ADA+LEGRANA++DV+EA KG+E Sbjct: 181 PVIGVVDTNHSPEGLAYVIPGNDDSSKAIQLYARGVADAILEGRANAMHDVLEAAKGEEA 240 Query: 257 VEVE 260 V E Sbjct: 241 VAAE 244