BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1557.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775582.1| RNA pseudouridylate synthase [Herbaspirillum... 441 e-122 ref|YP_001353751.1| pseudouridylate synthase [Janthinobacterium ... 399 e-109 ref|YP_001099632.1| putative pseudouridylate synthase [Herminiim... 383 e-104 ref|YP_004751983.1| putative pseudouridylate synthase [Collimona... 381 e-104 ref|ZP_04576008.1| pseudouridylate synthase [Oxalobacter formige... 378 e-103 >ref|YP_003775582.1| RNA pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ63674.1| RNA pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 245/248 (98%), Positives = 247/248 (99%) Query: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQKVTVERQASAE 60 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDG VVSVLGSKVLPHQKVTVERQASAE Sbjct: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGVVVSVLGSKVLPHQKVTVERQASAE 60 Query: 61 QAQRVTILINKPMGYVSGQAEDGYKPAMVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 QAQRVTIL+NKPMGYVSGQAEDGYKPA+VLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL Sbjct: 61 QAQRVTILLNKPMGYVSGQAEDGYKPAVVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 Query: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK Sbjct: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 Query: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR Sbjct: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 Query: 241 YLRPDEKF 248 YLRPDEKF Sbjct: 241 YLRPDEKF 248 >ref|YP_001353751.1| pseudouridylate synthase [Janthinobacterium sp. Marseille] gb|ABR89823.1| pseudouridylate synthase [Janthinobacterium sp. Marseille] Length = 248 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 205/248 (82%), Positives = 228/248 (91%) Query: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQKVTVERQASAE 60 M EP+RLSKRMSELGLCSRREADEWI +GWVRVDG+VVS LGSKVLP Q+VTVERQA+AE Sbjct: 1 MNEPLRLSKRMSELGLCSRREADEWIARGWVRVDGKVVSELGSKVLPTQRVTVERQAAAE 60 Query: 61 QAQRVTILINKPMGYVSGQAEDGYKPAMVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 Q++RVT+LINKPMGYVSGQAEDGYKPA+ LVN +RW+EDQ +FHP QL+SLVPAGRL Sbjct: 61 QSKRVTVLINKPMGYVSGQAEDGYKPAVALVNASTRWSEDQAATQFHPTQLRSLVPAGRL 120 Query: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 DIDSVGLLVLTQDGRIAK LIGED++V+KEYLVRVQY++PGKLPE+DLKRLNHGL++DGK Sbjct: 121 DIDSVGLLVLTQDGRIAKHLIGEDTSVEKEYLVRVQYSKPGKLPEADLKRLNHGLMLDGK 180 Query: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 L PAKV WQNEDQL F LREGKKRQIRRMCDMVGLKVIGLKRVRIG VKLG+LP GQWR Sbjct: 181 KLLPAKVKWQNEDQLSFILREGKKRQIRRMCDMVGLKVIGLKRVRIGNVKLGDLPVGQWR 240 Query: 241 YLRPDEKF 248 YLR DE+F Sbjct: 241 YLREDEQF 248 >ref|YP_001099632.1| putative pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL61505.1| putative ribosomal large subunit pseudouridine synthase [Herminiimonas arsenicoxydans] Length = 248 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 197/248 (79%), Positives = 225/248 (90%) Query: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQKVTVERQASAE 60 MTEP+RLSKRMSELGLCSRREADEWI +GWVRVDG+VVS LG+K+LP Q+VTVERQA+AE Sbjct: 1 MTEPLRLSKRMSELGLCSRREADEWIARGWVRVDGKVVSELGTKILPTQRVTVERQAAAE 60 Query: 61 QAQRVTILINKPMGYVSGQAEDGYKPAMVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 Q++RVTILINKPMGYVSGQAEDGYKPA+ LV +SRW ED + +FHP QL+SLVPAGRL Sbjct: 61 QSKRVTILINKPMGYVSGQAEDGYKPAVALVKAESRWKEDTSPTQFHPTQLRSLVPAGRL 120 Query: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 DIDSVGLLVLTQDGRIAK LIGE+S+V+KEYLVRVQY +PGKLPE+DL+RLNHGL++DGK Sbjct: 121 DIDSVGLLVLTQDGRIAKHLIGENSSVEKEYLVRVQYIKPGKLPEADLQRLNHGLMLDGK 180 Query: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 L PA+V WQNEDQL F LREGKKRQIRRMCD+VGLKV+GLKRVRIG VKLG+LP G+WR Sbjct: 181 KLLPAQVKWQNEDQLSFILREGKKRQIRRMCDIVGLKVVGLKRVRIGRVKLGDLPVGEWR 240 Query: 241 YLRPDEKF 248 YL E+F Sbjct: 241 YLAEGEQF 248 >ref|YP_004751983.1| putative pseudouridylate synthase [Collimonas fungivorans Ter331] gb|AEK61160.1| putative pseudouridylate synthase [Collimonas fungivorans Ter331] Length = 251 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 194/248 (78%), Positives = 225/248 (90%) Query: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQKVTVERQASAE 60 MTEP+RLSKRMSELGLCSRREADEWI +GWVRVDG VVS LGSKVLP Q+++VERQA+AE Sbjct: 4 MTEPLRLSKRMSELGLCSRREADEWIARGWVRVDGVVVSELGSKVLPSQRISVERQAAAE 63 Query: 61 QAQRVTILINKPMGYVSGQAEDGYKPAMVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 Q++RVTILINKP+GYVSGQAEDGY+PA+ L+ E +RW+ED++ FHP QL+SLVPAGRL Sbjct: 64 QSKRVTILINKPVGYVSGQAEDGYQPAVALIKEANRWSEDRSPTLFHPTQLRSLVPAGRL 123 Query: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 DIDSVGLLVLTQDGRIAK LIGE+++VDKEYLVRV+YT+ KLP+++L+RLNHGL +DGK Sbjct: 124 DIDSVGLLVLTQDGRIAKHLIGEETSVDKEYLVRVRYTKGDKLPDAELRRLNHGLTLDGK 183 Query: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 L+PA V WQN+DQL FTLREGKKRQIRRMCDMVGLKV+GLKRVRIGGVKLG LP GQWR Sbjct: 184 KLKPAIVKWQNDDQLSFTLREGKKRQIRRMCDMVGLKVLGLKRVRIGGVKLGNLPEGQWR 243 Query: 241 YLRPDEKF 248 YL DE+F Sbjct: 244 YLGADEQF 251 >ref|ZP_04576008.1| pseudouridylate synthase [Oxalobacter formigenes HOxBLS] gb|EEO26970.1| pseudouridylate synthase [Oxalobacter formigenes HOxBLS] Length = 249 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 194/248 (78%), Positives = 226/248 (91%) Query: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQKVTVERQASAE 60 M+EPVRLSKRMSELG+CSRREADEWIE+GWV+VDG+ VS LGSKVLPHQK+++E+QAS E Sbjct: 2 MSEPVRLSKRMSELGICSRREADEWIERGWVKVDGKTVSQLGSKVLPHQKISIEKQASQE 61 Query: 61 QAQRVTILINKPMGYVSGQAEDGYKPAMVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 QA+RVTILINKP+GYVSGQAEDGYKPA+ L++E +RW D ++ +F P QL+SLVPAGRL Sbjct: 62 QARRVTILINKPVGYVSGQAEDGYKPAVSLISEATRWKGDPSKEKFKPSQLRSLVPAGRL 121 Query: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 DIDSVGLLVLTQDGRIAK+LIGE+SA DKEYLVRV+Y +PGKLPE+DL+ L HGL +DGK Sbjct: 122 DIDSVGLLVLTQDGRIAKRLIGENSATDKEYLVRVKYLKPGKLPENDLQLLRHGLKLDGK 181 Query: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 PL PAKV WQN+DQLRF LREGKKRQIRRMC+ VGLKVIGLKR+RIG +KLG+LP GQWR Sbjct: 182 PLLPAKVNWQNDDQLRFVLREGKKRQIRRMCEAVGLKVIGLKRIRIGQIKLGDLPPGQWR 241 Query: 241 YLRPDEKF 248 YLRP+EKF Sbjct: 242 YLRPEEKF 249