BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1556.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775581.1| hypothetical protein Hsero_2174 [Herbaspiril...   251   3e-65
ref|YP_296788.1| hypothetical protein Reut_A2583 [Ralstonia eutr...   208   2e-52
ref|YP_003977733.1| hypothetical protein AXYL_01680 [Achromobact...   202   1e-50
ref|NP_890117.1| hypothetical protein BB3582 [Bordetella bronchi...   201   3e-50
ref|NP_885352.1| hypothetical protein BPP3181 [Bordetella parape...   201   3e-50

>ref|YP_003775581.1| hypothetical protein Hsero_2174 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63673.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  251 bits (641), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 141/161 (87%), Positives = 155/161 (96%)

Query: 1   MSTTINSAQSFTLERNAFGRLVLTDAQGGLHEHVIPVRAFPVTSPDRGLSLVSSDGHELA 60
           M+T +N+ QSFTL+RN+FGRLVLTDA G  H++VIPVRAFP+TSPDRG+SLVSSDGHELA
Sbjct: 1   MNTPMNAPQSFTLQRNSFGRLVLTDAAGVAHDNVIPVRAFPITSPDRGMSLVSSDGHELA 60

Query: 61  WIDTLEEVDAPTRRLIEEELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGE 120
           WIDTL+++DAPTR L+E+ELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGE
Sbjct: 61  WIDTLDQLDAPTRALVEQELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGE 120

Query: 121 EDIRRLAAPALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
           EDIRRLAAPALLIADSHGIQFLIRDQKALDKHSRKILDRFL
Sbjct: 121 EDIRRLAAPALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161


>ref|YP_296788.1| hypothetical protein Reut_A2583 [Ralstonia eutropha JMP134]
 gb|AAZ61944.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 167

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 105/151 (69%), Positives = 122/151 (80%)

Query: 11  FTLERNAFGRLVLTDAQGGLHEHVIPVRAFPVTSPDRGLSLVSSDGHELAWIDTLEEVDA 70
           FTL RN FGRLVLT   G  HE V+PVRAFP+ +PD G+ ++S+DGHELAWI  L+ + A
Sbjct: 17  FTLTRNGFGRLVLTLGDGTAHEGVVPVRAFPIGAPDDGIGMMSTDGHELAWIPRLDRLPA 76

Query: 71  PTRRLIEEELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAPA 130
           P R ++EEELA+REFMPEIQRIV VSTFATPS+WTVQT RG TT  L+GEEDIRRLA   
Sbjct: 77  PQRAMVEEELAAREFMPEIQRIVGVSTFATPSEWTVQTDRGQTTLVLRGEEDIRRLAGTT 136

Query: 131 LLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
           LLI+DSHGI +LIRD  ALD+ SRKILDRFL
Sbjct: 137 LLISDSHGIHYLIRDLMALDRASRKILDRFL 167


>ref|YP_003977733.1| hypothetical protein AXYL_01680 [Achromobacter xylosoxidans A8]
 gb|ADP15018.1| hypothetical protein AXYL_01680 [Achromobacter xylosoxidans A8]
          Length = 156

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/152 (69%), Positives = 122/152 (80%)

Query: 10  SFTLERNAFGRLVLTDAQGGLHEHVIPVRAFPVTSPDRGLSLVSSDGHELAWIDTLEEVD 69
           SF L RNAFGRL    A G  HE V+PVRAFP++ P RGLSLV+ DGHEL WI+ L +V 
Sbjct: 5   SFQLRRNAFGRLEFQAAGGETHEGVLPVRAFPISEPGRGLSLVTVDGHELLWIEHLSDVP 64

Query: 70  APTRRLIEEELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAP 129
           AP R LIEEELASREFMPEI+++ SVSTFATPS W V T RG T+FTL+GEEDIRRL+  
Sbjct: 65  APQRALIEEELASREFMPEIRKLASVSTFATPSTWQVDTDRGPTSFTLRGEEDIRRLSPQ 124

Query: 130 ALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
            LLIADSHGI +L+RD ++LDKHSRK+LDRFL
Sbjct: 125 TLLIADSHGIFYLVRDIQSLDKHSRKLLDRFL 156


>ref|NP_890117.1| hypothetical protein BB3582 [Bordetella bronchiseptica RB50]
 emb|CAE34076.1| hypothetical protein BB3582 [Bordetella bronchiseptica RB50]
          Length = 156

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 102/152 (67%), Positives = 119/152 (78%)

Query: 10  SFTLERNAFGRLVLTDAQGGLHEHVIPVRAFPVTSPDRGLSLVSSDGHELAWIDTLEEVD 69
           +F L RN  GRLV T A G  HE V+PVRAFP+++P  GLSLVS+DGHELAW+D + ++ 
Sbjct: 5   AFQLHRNQAGRLVFTGADGRAHEGVVPVRAFPISAPASGLSLVSADGHELAWLDDVAQLP 64

Query: 70  APTRRLIEEELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAP 129
              R+L+E ELASREFMPEI+RIVSVSTFATPS W V+T RG  TF L+GEEDIRRLA  
Sbjct: 65  PAQRQLVEAELASREFMPEIRRIVSVSTFATPSSWQVETDRGNATFVLRGEEDIRRLAGH 124

Query: 130 ALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
            LLI D HGI FLIRD  ALD+HSRK+LDRFL
Sbjct: 125 TLLITDMHGIFFLIRDALALDRHSRKLLDRFL 156


>ref|NP_885352.1| hypothetical protein BPP3181 [Bordetella parapertussis 12822]
 emb|CAE38466.1| hypothetical protein BPP3181 [Bordetella parapertussis]
          Length = 162

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 102/152 (67%), Positives = 119/152 (78%)

Query: 10  SFTLERNAFGRLVLTDAQGGLHEHVIPVRAFPVTSPDRGLSLVSSDGHELAWIDTLEEVD 69
           +F L RN  GRLV T A G  HE V+PVRAFP+++P  GLSLVS+DGHELAW+D + ++ 
Sbjct: 11  AFQLHRNQAGRLVFTGADGRAHEGVVPVRAFPISAPASGLSLVSADGHELAWLDDVAQLP 70

Query: 70  APTRRLIEEELASREFMPEIQRIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAP 129
              R+L+E ELASREFMPEI+RIVSVSTFATPS W V+T RG  TF L+GEEDIRRLA  
Sbjct: 71  PAQRQLVEAELASREFMPEIRRIVSVSTFATPSSWQVETDRGNATFVLRGEEDIRRLAGH 130

Query: 130 ALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
            LLI D HGI FLIRD  ALD+HSRK+LDRFL
Sbjct: 131 TLLITDMHGIFFLIRDALALDRHSRKLLDRFL 162