BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1550.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypepti... 322 1e-86 ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans ... 296 1e-78 ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J... 282 2e-74 ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]... 281 2e-74 ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D... 280 7e-74 >ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 158/178 (88%), Positives = 171/178 (96%) Query: 1 MAIREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60 MAIREILKMGDPRLLRQAQPVT+FGTPELA+LVDDMF+TMRAVNGAGLAAPQIGVDLQLV Sbjct: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 Query: 61 IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 IFGFG NQRYP+AP VPETVLINPVLTPLS++EEEGWEGCLSVPGMRGVVPRWSRLRYQG Sbjct: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 Query: 121 LDLHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIKDFTRFGFTEILFPELDPNDDD 178 +D +G IDR+V+GFHARVVQHECDHLQGILYPMRI+DF RFGFTE+LFPELDP+ DD Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 >ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans Ter331] gb|AEK61129.1| Peptide deformylase [Collimonas fungivorans Ter331] Length = 178 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 142/178 (79%), Positives = 155/178 (87%) Query: 1 MAIREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLV 60 M +REILKMGDPRLLRQA+PVT FGTPEL L+ DMF+TM A NGAGLAAPQIGV+LQLV Sbjct: 1 MTVREILKMGDPRLLRQAEPVTAFGTPELEALIADMFDTMYAANGAGLAAPQIGVNLQLV 60 Query: 61 IFGFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 IFGF +N RYP+APAVPETVLINPVL PLSD+ E+GWEGCLSVPG+RGVVPRW+ L Y+G Sbjct: 61 IFGFKNNVRYPDAPAVPETVLINPVLRPLSDDTEDGWEGCLSVPGLRGVVPRWTSLHYEG 120 Query: 121 LDLHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIKDFTRFGFTEILFPELDPNDDD 178 D G I R VDGFHARVVQHE DHL GILYPMRIKDFTRFGFTE+LFPELDPN DD Sbjct: 121 FDQTGAAISRDVDGFHARVVQHETDHLNGILYPMRIKDFTRFGFTEVLFPELDPNHDD 178 >ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J] gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J] Length = 177 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 134/176 (76%), Positives = 151/176 (85%) Query: 3 IREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIF 62 IR ILKMGD RLLR A+PV +F TPEL L++DMF+TM A GAGLAAPQIGVDLQ+VIF Sbjct: 2 IRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 61 Query: 63 GFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGLD 122 GF N RYP+APAVP+TVLINP + PLSDE EEGWEGCLSVPG+RGVVPR++RLRY G D Sbjct: 62 GFDRNDRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGFD 121 Query: 123 LHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIKDFTRFGFTEILFPELDPNDDD 178 HG+ IDR +GFHARVVQHECDHLQG+LYPMR+KDFTRFGFTE+LFPEL N DD Sbjct: 122 QHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVLFPELPANHDD 177 >ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 177 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 134/176 (76%), Positives = 151/176 (85%) Query: 3 IREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIF 62 IR ILKMGD RLLR A+PV +F TPEL L++DMF+TM A GAGLAAPQIGVDLQ+VIF Sbjct: 2 IRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 61 Query: 63 GFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGLD 122 GF N RYP+APAVP+TVLINP + PLSDE EEGWEGCLSVPG+RGVVPR++RLRY G D Sbjct: 62 GFDRNDRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGFD 121 Query: 123 LHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIKDFTRFGFTEILFPELDPNDDD 178 HG+ IDR +GFHARVVQHECDHLQG+LYPMR+KDFTRFGFTE+LFPEL N DD Sbjct: 122 QHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVLFPELPANHDD 177 >ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D] gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D] Length = 177 Score = 280 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 132/176 (75%), Positives = 151/176 (85%) Query: 3 IREILKMGDPRLLRQAQPVTQFGTPELAQLVDDMFETMRAVNGAGLAAPQIGVDLQLVIF 62 IR ILKMGD RLLR A+PV +F TPEL L++DMF+TM A GAGLAAPQIGVDLQ+VIF Sbjct: 2 IRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 61 Query: 63 GFGHNQRYPEAPAVPETVLINPVLTPLSDEEEEGWEGCLSVPGMRGVVPRWSRLRYQGLD 122 GF N RYP+APAVP+TVLINP + PLS++ EEGWEGCLSVPG+RGVVPR++RLRY G D Sbjct: 62 GFDRNDRYPDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPRYTRLRYTGFD 121 Query: 123 LHGNEIDRTVDGFHARVVQHECDHLQGILYPMRIKDFTRFGFTEILFPELDPNDDD 178 HG+ IDR +GFHARVVQHECDHLQG+LYPMR+KDFTRFGFTE+LFPEL N DD Sbjct: 122 QHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTRFGFTEVLFPELPANHDD 177