BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1545.p (590 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane pr... 790 0.0 ref|YP_004753015.1| methyl-accepting chemotaxis sensory transduc... 548 e-153 ref|ZP_05588611.1| putative methyl-accepting chemotaxis protein ... 461 e-127 ref|YP_107091.1| putative methyl-accepting chemotaxis protein [B... 460 e-127 ref|YP_001894206.1| methyl-accepting chemotaxis sensory transduc... 459 e-127 >ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63663.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 506/603 (83%), Positives = 533/603 (88%), Gaps = 13/603 (2%) Query: 1 MKSLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADV 60 MKSLKAQLLSALVVMW GLL LAAWSAFSARE MI+ERKDGLRRVVEAANGVV SYVADV Sbjct: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADV 60 Query: 61 AAGKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEG 120 AAG++SKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAM+GKNVADRKDSEG Sbjct: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 Query: 121 KAYYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQ 180 KAYYVEMMKVGQEK GFVQYMGRLPGTDDSNRTPKMSYVVHN+ WDWFIVTGVFLSDVQ Sbjct: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 Query: 181 AQFRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVD 240 AQFR+DLF+LLGIL+VVG +VS+MMLAIIRRITGSLGGEPAYAV IATRIA+GDLTV+V Sbjct: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 Query: 241 TRAGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLA 300 TR GD RSLL+ MATMRERL GVIKGIRQGTDAID+GAREIAAGNLDLSSRTEEQAGSLA Sbjct: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 Query: 301 TTASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISD 360 TTASNMD LTATVKQNADNARQAGQLA++AS+IA RGGEVVGQVVQTMEGIT SSRKI+D Sbjct: 301 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 Query: 421 SVQRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQV 480 SVQRVG GSDQVARAG+TMGEVV+AV LTDIV EISAASEEQR GIEQVNLAIGEMDQV Sbjct: 421 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV 480 Query: 481 TQQNAALVEEAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVA------------V 528 TQQNAALVE+AAAAAGSLEEQARRLKAAV+TFRV+GEE +A V + V Sbjct: 481 TQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATATPTAV 540 Query: 529 PKAAPVVAKAAIPVKPLP-KPAAKPLVKAAAPLPPPGKPAAPAKPASAGRSSPANDDGDW 587 KA A KPL KP KP AA P A AKPASA ++ PA DDGDW Sbjct: 541 RKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAGDDGDW 600 Query: 588 ETF 590 ETF Sbjct: 601 ETF 603 >ref|YP_004753015.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK62192.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 593 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 349/593 (58%), Positives = 437/593 (73%), Gaps = 9/593 (1%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 SLKA+L L VMW+GLL LA WSA + R+TM++ER+ GL+ VVE A G+V Y DVAA Sbjct: 5 SLKAKLWLVLAVMWLGLLLLAGWSALNTRDTMMKEREAGLKNVVETAAGIVKGYADDVAA 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 ++S +AQ AL+RI++MRY DNY+F+FDSRPVVLM P++K ++ KNV +RKD++GK Sbjct: 65 SRLSLADAQSQALQRISSMRYAQDNYVFVFDSRPVVLMHPTSKDIVNKNVGERKDTDGKL 124 Query: 123 YYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQAQ 182 YYVEM+K+G+++ QG V YMGRLPGT D+ R K+S V + WDWF+V+GVF++DVQA Sbjct: 125 YYVEMVKLGKQQQQGIVHYMGRLPGTADT-RAEKISQVNYFAPWDWFLVSGVFVNDVQAA 183 Query: 183 FRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTR 242 F +L K L I+ V+G VS ML IIR +T SLGGEP+YA AIA RIA G+L + V Sbjct: 184 FYDNLLKQLLIMFVIGATVSATMLLIIRSVTRSLGGEPSYAAAIAARIAGGELDLAVLVD 243 Query: 243 AGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATT 302 D SLL M M+ +L I IR+GT I +EI+AGN DLS+RTE+QA SL T Sbjct: 244 GKDKSSLLHAMRQMQLQLAAAITEIREGTHNIGASIKEISAGNSDLSARTEQQAASLQQT 303 Query: 303 ASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDII 362 A++M+ LTATV+QNADNARQAGQLA +AS IA +GGEVVGQVV TM+GIT+SSR+I+DII Sbjct: 304 AASMEQLTATVRQNADNARQAGQLAQSASSIAAKGGEVVGQVVHTMQGITDSSRRIADII 363 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAQAAKEIK LI DSV Sbjct: 364 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAQAAKEIKELIGDSV 423 Query: 423 QRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQ 482 +V GS+ VARAG+TM E+V AV R+TDI++E++ ASEEQ GIEQVN A+ +MDQVTQ Sbjct: 424 DKVDGGSELVARAGQTMDEIVQAVKRVTDIMAEVTVASEEQSSGIEQVNQAVTQMDQVTQ 483 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVA-----VPKAAPVVAK 537 QNAALVE+ AAAAGSLE QA RL+ AV+ FR+ + ++A +A +P A P A+ Sbjct: 484 QNAALVEQVAAAAGSLEGQALRLQDAVSVFRMAEQPRSSAPPALAKRAEPLPSARPAPAR 543 Query: 538 AAIPVKPLPKPAAKPLVKAAAPLPPPGKPAAPAKPASAGRSSPANDDGDWETF 590 A P P+ K A + A GK + A A + + +N D DWETF Sbjct: 544 RASP--PVLKTVAAGKTRTGAGKLAAGKAQPTSWKAPAVKLAASNAD-DWETF 593 >ref|ZP_05588611.1| putative methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] Length = 544 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 289/512 (56%), Positives = 373/512 (72%), Gaps = 2/512 (0%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 SL +L AL ++W+GLL + AWSAF R TM+ ERK+G+ +V++A GVV +Y A + Sbjct: 2 SLNRKLWLALALVWVGLLGVGAWSAFETRTTMLAERKEGMANLVDSAAGVVKAYYALAQS 61 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 GK+S E+A++ ALER+AAMRY YLF+ DS+PVVLM P+ ++G V D D +GK Sbjct: 62 GKMSDEDARREALERLAAMRYGDSGYLFVMDSKPVVLMHPTLPKLVGTQVGDYLDPDGKR 121 Query: 123 YYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQAQ 182 +V ++ +E G GF +Y GRLP ++ + PK+SYV WDW I +GVFL D+ Sbjct: 122 LFVTILNAAKESGHGFAEYRGRLPHSETA--VPKISYVTRFAPWDWNISSGVFLKDIDTV 179 Query: 183 FRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTR 242 + L L ++ V+G +++ ML IIR + SLGGEP A ++A RIA+GDLT V R Sbjct: 180 YYETLVSHLAVVFVIGLVITAAMLVIIRNVRASLGGEPDEAASLAARIAAGDLTRPVAVR 239 Query: 243 AGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATT 302 AGD S++ M M+ RL I GIR+ ++I + EIA+GN DLS RTE+QA SL T Sbjct: 240 AGDRTSMMAAMRDMQGRLQSTIGGIRRAAESIAAASHEIASGNHDLSQRTEQQAASLEET 299 Query: 303 ASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDII 362 A++M+ LTATVKQNA+NARQA LANNASEIA +G +VV +V+ TM I +SS+KI+DII Sbjct: 300 AASMEELTATVKQNAENARQASGLANNASEIALKGNDVVSRVIGTMGEINDSSQKIADII 359 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI+ SV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKQLIDASV 419 Query: 423 QRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQ 482 +RV +GS V +AGETM E++ AV R+TDI+ EI+AASEEQ GI QV A+ +MD++TQ Sbjct: 420 ERVNNGSALVGQAGETMTEILQAVRRVTDIMGEIAAASEEQSSGISQVGRAVTQMDEMTQ 479 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFRV 514 QNAALVEEAAAAA SL+EQA RL+ +V+ F+V Sbjct: 480 QNAALVEEAAAAASSLQEQAARLRESVSAFQV 511 >ref|YP_107091.1| putative methyl-accepting chemotaxis protein [Burkholderia pseudomallei K96243] ref|ZP_03451029.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 576] emb|CAH34454.1| putative methyl-accepting chemotaxis protein [Burkholderia pseudomallei K96243] gb|EEC36843.1| methyl-accepting chemotaxis protein [Burkholderia pseudomallei 576] Length = 546 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 289/511 (56%), Positives = 372/511 (72%), Gaps = 2/511 (0%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 SL +L AL ++W+GLL + AWSAF R TM+ ERK+G+ +V++A GVV +Y A + Sbjct: 5 SLNRKLWLALALVWVGLLGVGAWSAFETRTTMLAERKEGMANLVDSAAGVVKAYYALAQS 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 GK+S E+A+++ALERIAAMRY YLF+ DS+PVVLM P+ ++G V D D +GK Sbjct: 65 GKMSDEDARRDALERIAAMRYGDSGYLFVMDSKPVVLMHPTLPKLVGTQVGDYLDPDGKR 124 Query: 123 YYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQAQ 182 +V ++ + G GF +Y GRLP ++ + PK+SYV WDW I +GVFL D+ Sbjct: 125 LFVTILNAAKAGGHGFAEYRGRLPHSETA--VPKISYVTRFAPWDWNISSGVFLKDIDTV 182 Query: 183 FRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTR 242 + L L ++ V+G +++ ML IIR + SLGGEP A ++A RIA+GDLT V R Sbjct: 183 YYETLVGHLAVVFVIGLVITAAMLVIIRNVRASLGGEPDEAASLAARIAAGDLTRPVAVR 242 Query: 243 AGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATT 302 AGD S++ M M+ RL I GIR+ ++I + EIA+GN DLS RTE+QA SL T Sbjct: 243 AGDGTSMMAAMRDMQGRLRSTIGGIRRAAESIAAASHEIASGNHDLSQRTEQQAASLEET 302 Query: 303 ASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDII 362 A++M+ LTATVKQNA+NARQA LANNASEIA +G +VV +V+ TM I +SSRKI+DII Sbjct: 303 AASMEELTATVKQNAENARQASGLANNASEIALKGNDVVSRVIGTMGEINDSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI+ SV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSATAAKEIKQLIDASV 422 Query: 423 QRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQ 482 +RV +GS V +AGETM E++ AV R+TDI+ EI+AASEEQ GI QV A+ +MD++TQ Sbjct: 423 ERVNNGSALVGQAGETMTEILQAVRRVTDIMGEIAAASEEQSSGISQVGRAVTQMDEMTQ 482 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFR 513 QNAALVEEAAAAA SL+EQA RL+ +V+ F+ Sbjct: 483 QNAALVEEAAAAASSLQEQAARLRESVSAFQ 513 >ref|YP_001894206.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phytofirmans PsJN] gb|ACD14982.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phytofirmans PsJN] Length = 627 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 303/585 (51%), Positives = 391/585 (66%), Gaps = 7/585 (1%) Query: 3 SLKAQLLSALVVMWIGLLALAAWSAFSARETMIEERKDGLRRVVEAANGVVNSYVADVAA 62 SL +L +L ++W+GLL + WSA R TM+ ERK G+ +V+AA GVVN Y A + Sbjct: 5 SLNRKLWLSLALVWLGLLGVGLWSAVETRSTMLAERKAGMVNLVDAAQGVVNGYYALAQS 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 GK+S+ +AQ+ AL R+A MRY YLF+ DS+PVVLM P+ M GK V D KD +GK Sbjct: 65 GKLSEADAQREALARLATMRYGESGYLFVMDSKPVVLMHPTLPQMTGKPVGDFKDPDGKL 124 Query: 123 YYVEMMKVGQEKGQGFVQYMGRLPGTDDSNRTPKMSYVVHNKTWDWFIVTGVFLSDVQAQ 182 YV ++ + G+GF +Y GRLP ++ + PK+SYVV WDW I +GVF+ D+ Sbjct: 125 LYVAIVDAAKATGRGFAEYRGRLPHSETA--VPKISYVVRFAPWDWNITSGVFIKDIDTV 182 Query: 183 FRSDLFKLLGILVVVGGLVSLMMLAIIRRITGSLGGEPAYAVAIATRIASGDLTVRVDTR 242 + L L +++V+G ++SL ML IIR + SLGGEP A +A IA GDLT VD R Sbjct: 183 YYETLLGHLAVVLVIGAIISLAMLLIIRNVRASLGGEPDQAARLAASIAQGDLTQAVDVR 242 Query: 243 AGDNRSLLFEMATMRERLGGVIKGIRQGTDAIDVGAREIAAGNLDLSSRTEEQAGSLATT 302 D S++ M M+ RL I IR+ ++I ++IAAGN DLS RTE+QA SL T Sbjct: 243 PQDKTSMMAAMHDMQNRLQQTIGEIRRSAESIASATQQIAAGNGDLSQRTEQQAASLQET 302 Query: 303 ASNMDTLTATVKQNADNARQAGQLANNASEIAKRGGEVVGQVVQTMEGITESSRKISDII 362 A++M+ LTATVKQNADNARQA LA+NASEIA RG +VV +V+ TM I +SSR+I+DII Sbjct: 303 AASMEELTATVKQNADNARQASGLAHNASEIATRGNDVVSRVIGTMGEINDSSRQIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 GVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS AAKEIK LI SV Sbjct: 363 GVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSGTAAKEIKQLISASV 422 Query: 423 QRVGDGSDQVARAGETMGEVVSAVHRLTDIVSEISAASEEQRRGIEQVNLAIGEMDQVTQ 482 +RV +GS V +AG TMGE++ AV R+TDI+ EI+AASEEQ GI QV A+ +MD+VTQ Sbjct: 423 ERVHNGSTLVQQAGTTMGEILQAVQRVTDIMGEIAAASEEQSTGIAQVGRAVTQMDEVTQ 482 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFRVEGEEGAAASVPVAVPKAAPVVAKAAIPV 542 QNAALVE+AAAAA SL++QA RL+ V+ FRV G E A+ V + AA Sbjct: 483 QNAALVEQAAAAAASLQDQAGRLRETVSAFRVNGAESGASGSAVVAARRVAATVAAAEAP 542 Query: 543 KPLPKPAAKP-----LVKAAAPLPPPGKPAAPAKPASAGRSSPAN 582 + + A + +A PP +P PA ++ S+PA+ Sbjct: 543 QAVATATAAAVREIGVASHSASAPPRAEPKLPAPARTSATSAPAS 587