BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1544.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775570.1| succinyldiaminopimelate aminotransferase [He... 543 e-152 ref|YP_001353758.1| N-succinyldiaminopimelate aminotransferase [... 467 e-130 ref|YP_004751945.1| N-succinyl-L,L-diaminopimelate aminotransfer... 462 e-128 ref|YP_001099625.1| putative aminotransferase [Herminiimonas ars... 462 e-128 emb|CAL61498.2| N-succinyl-L,L-diaminopimelate aminotransferase ... 459 e-127 >ref|YP_003775570.1| succinyldiaminopimelate aminotransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63662.1| succinyldiaminopimelate aminotransferase protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 267/281 (95%), Positives = 276/281 (98%) Query: 1 MCPNPFYQIYEGSAYLAGAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTG 60 MCPNPFYQIYEGSAYLAGA+PYFVNSDP RNFAPDFSQVPQ+VWERVQLLFVCSPGNPTG Sbjct: 138 MCPNPFYQIYEGSAYLAGAQPYFVNSDPKRNFAPDFSQVPQDVWERVQLLFVCSPGNPTG 197 Query: 61 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFKQDPPLGGMQAARLLGRDYRNLVSFSS 120 AVLTLEDWKELFALSDRYGFVIASDECYSEIYF +DPPLGGMQAARLLGRDYR L+SFSS Sbjct: 198 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFNEDPPLGGMQAARLLGRDYRRLISFSS 257 Query: 121 LSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIAK 180 LSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQ NIAK Sbjct: 258 LSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQGNIAK 317 Query: 181 YVTKFSQVTPLLQEVMDVALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSYL 240 YVTKFSQVTPLLQEV++VALPDAAFYLWAKVDKLV+ISDTEFA+RLYAEYNVTVLPGSYL Sbjct: 318 YVTKFSQVTPLLQEVLEVALPDAAFYLWAKVDKLVNISDTEFAQRLYAEYNVTVLPGSYL 377 Query: 241 AREAHGVNPGAGRIRMALVAEVDECLEAAQRIVAFTRKLAA 281 AREAHGVNPGAGRIRMALVAEV+ECLEAAQRIVAFTRKLA Sbjct: 378 AREAHGVNPGAGRIRMALVAEVEECLEAAQRIVAFTRKLAG 418 >ref|YP_001353758.1| N-succinyldiaminopimelate aminotransferase [Janthinobacterium sp. Marseille] gb|ABR88332.1| N-succinyldiaminopimelate aminotransferase [Janthinobacterium sp. Marseille] Length = 386 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 224/282 (79%), Positives = 249/282 (88%), Gaps = 1/282 (0%) Query: 1 MCPNPFYQIYEGSAYLAGAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTG 60 +CPNP YQIYEG+AYLAGAEPYFVN DPARNFAPDF+ VP EVW RVQL+++CSPGNP G Sbjct: 102 VCPNPLYQIYEGAAYLAGAEPYFVNCDPARNFAPDFASVPPEVWARVQLVYICSPGNPAG 161 Query: 61 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFKQDPPLGGMQAARLLGRD-YRNLVSFS 119 AVLTL+DW ELFALSDRYGFVIA+DECYSEIYFK + PLGG++AA LGR+ Y L+ FS Sbjct: 162 AVLTLDDWAELFALSDRYGFVIAADECYSEIYFKAEAPLGGLEAAHKLGREGYPRLIGFS 221 Query: 120 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIA 179 SLSKRSNVPGMRSGFVAGDA I+K FLLYRTYHG+AMSP +Q+AS+ AW DE HV +N Sbjct: 222 SLSKRSNVPGMRSGFVAGDANIIKSFLLYRTYHGSAMSPSVQSASIAAWNDEQHVIENRE 281 Query: 180 KYVTKFSQVTPLLQEVMDVALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSY 239 KYV KF QVTPLLQEVMDV+LPDA FYLWA+VDKLVDISD EFA+RLYAEYNVTVLPGSY Sbjct: 282 KYVKKFKQVTPLLQEVMDVSLPDAGFYLWARVDKLVDISDVEFAKRLYAEYNVTVLPGSY 341 Query: 240 LAREAHGVNPGAGRIRMALVAEVDECLEAAQRIVAFTRKLAA 281 L REAHG+NPG RIRMALVAEVDECLEAAQRIV F RKL++ Sbjct: 342 LGREAHGINPGQNRIRMALVAEVDECLEAAQRIVEFARKLSS 383 >ref|YP_004751945.1| N-succinyl-L,L-diaminopimelate aminotransferase alternative [Collimonas fungivorans Ter331] gb|AEK61122.1| N-succinyl-L,L-diaminopimelate aminotransferase alternative [Collimonas fungivorans Ter331] Length = 416 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 226/280 (80%), Positives = 251/280 (89%), Gaps = 1/280 (0%) Query: 1 MCPNPFYQIYEGSAYLAGAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTG 60 MCPNPFYQIYEG+AYLAGA+PYFVNSDPARNFAPD+ VP +VW RV+LL++CSPGNPTG Sbjct: 137 MCPNPFYQIYEGAAYLAGAQPYFVNSDPARNFAPDYRSVPDDVWPRVKLLYLCSPGNPTG 196 Query: 61 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFKQDPPLGGMQAARLLGRD-YRNLVSFS 119 AVL+LEDWKELFALSDR+GFVIA+DECYSEIYFK + PLGG+QAA +LGR+ Y L++FS Sbjct: 197 AVLSLEDWKELFALSDRHGFVIAADECYSEIYFKPEAPLGGLQAAHMLGREGYPRLIAFS 256 Query: 120 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIA 179 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHG AMSP +QAASV AW DETHV +N A Sbjct: 257 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGGAMSPPVQAASVAAWNDETHVVENRA 316 Query: 180 KYVTKFSQVTPLLQEVMDVALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSY 239 KY+ KF QVTP+LQ V+DVALPDA FYLWAKVDKL ISDT+FA+RLYAEYNVTVLPGSY Sbjct: 317 KYMAKFQQVTPVLQTVLDVALPDAGFYLWAKVDKLAAISDTDFAKRLYAEYNVTVLPGSY 376 Query: 240 LAREAHGVNPGAGRIRMALVAEVDECLEAAQRIVAFTRKL 279 LAR+AHG NPG RIRMALVAEV+ECLEAAQRI AF L Sbjct: 377 LARDAHGSNPGRQRIRMALVAEVEECLEAAQRIAAFCHGL 416 >ref|YP_001099625.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 312 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 221/283 (78%), Positives = 246/283 (86%), Gaps = 1/283 (0%) Query: 1 MCPNPFYQIYEGSAYLAGAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTG 60 +CPNP YQIYEG+AYLAGA+PYFVN DPARNFAPDF+ + EVW RVQL++VCSPGNP G Sbjct: 28 VCPNPLYQIYEGAAYLAGAQPYFVNCDPARNFAPDFAAITHEVWSRVQLVYVCSPGNPAG 87 Query: 61 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFKQDPPLGGMQAARLLGRD-YRNLVSFS 119 AVLTL+DW ELFALSDRY FVIA+DECYSEIYFK + PLGG++AA LGR Y L+ FS Sbjct: 88 AVLTLDDWAELFALSDRYNFVIAADECYSEIYFKAEAPLGGLEAAHKLGRKGYPRLIGFS 147 Query: 120 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIA 179 SLSKRSNVPGMRSGFVAGDA ILKKFLLYRTYHG+AMSP +Q+AS+ AW DE HV DN Sbjct: 148 SLSKRSNVPGMRSGFVAGDAEILKKFLLYRTYHGSAMSPSVQSASIAAWNDEQHVIDNRE 207 Query: 180 KYVTKFSQVTPLLQEVMDVALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSY 239 KY+ KF+QVTPLLQEVMDV+LPDA FYLWAKVDKL I D EFA+RLYAEYNVTVLPGSY Sbjct: 208 KYIQKFNQVTPLLQEVMDVSLPDAGFYLWAKVDKLAAIGDIEFAKRLYAEYNVTVLPGSY 267 Query: 240 LAREAHGVNPGAGRIRMALVAEVDECLEAAQRIVAFTRKLAAA 282 L REAHG+NPG RIRMALVAEVDECLEAAQRIV FT+KL+ + Sbjct: 268 LGREAHGINPGQNRIRMALVAEVDECLEAAQRIVEFTQKLSQS 310 >emb|CAL61498.2| N-succinyl-L,L-diaminopimelate aminotransferase [Herminiimonas arsenicoxydans] Length = 413 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 221/283 (78%), Positives = 246/283 (86%), Gaps = 1/283 (0%) Query: 1 MCPNPFYQIYEGSAYLAGAEPYFVNSDPARNFAPDFSQVPQEVWERVQLLFVCSPGNPTG 60 +CPNP YQIYEG+AYLAGA+PYFVN DPARNFAPDF+ + EVW RVQL++VCSPGNP G Sbjct: 129 VCPNPLYQIYEGAAYLAGAQPYFVNCDPARNFAPDFAAITHEVWSRVQLVYVCSPGNPAG 188 Query: 61 AVLTLEDWKELFALSDRYGFVIASDECYSEIYFKQDPPLGGMQAARLLGRD-YRNLVSFS 119 AVLTL+DW ELFALSDRY FVIA+DECYSEIYFK + PLGG++AA LGR Y L+ FS Sbjct: 189 AVLTLDDWAELFALSDRYNFVIAADECYSEIYFKAEAPLGGLEAAHKLGRKGYPRLIGFS 248 Query: 120 SLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGAAMSPVIQAASVLAWQDETHVQDNIA 179 SLSKRSNVPGMRSGFVAGDA ILKKFLLYRTYHG+AMSP +Q+AS+ AW DE HV DN Sbjct: 249 SLSKRSNVPGMRSGFVAGDAEILKKFLLYRTYHGSAMSPSVQSASIAAWNDEQHVIDNRE 308 Query: 180 KYVTKFSQVTPLLQEVMDVALPDAAFYLWAKVDKLVDISDTEFARRLYAEYNVTVLPGSY 239 KY+ KF+QVTPLLQEVMDV+LPDA FYLWAKVDKL I D EFA+RLYAEYNVTVLPGSY Sbjct: 309 KYIQKFNQVTPLLQEVMDVSLPDAGFYLWAKVDKLAAIGDIEFAKRLYAEYNVTVLPGSY 368 Query: 240 LAREAHGVNPGAGRIRMALVAEVDECLEAAQRIVAFTRKLAAA 282 L REAHG+NPG RIRMALVAEVDECLEAAQRIV FT+KL+ + Sbjct: 369 LGREAHGINPGQNRIRMALVAEVDECLEAAQRIVEFTQKLSQS 411