BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1538.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775564.1| amino acid ABC transporter/signal transducti... 380 e-104 ref|YP_004751936.1| putative amino acid ABC transporter periplas... 313 1e-83 ref|ZP_08275610.1| putative amino acid ABC transporter, periplas... 283 3e-74 ref|YP_549943.1| extracellular solute-binding protein [Polaromon... 256 2e-66 ref|YP_003604895.1| extracellular solute-binding protein family ... 252 4e-65 >ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] emb|CAP19663.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ63656.1| ABC-type amino acid transport/signal transduction system, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 203/210 (96%), Positives = 205/210 (97%) Query: 1 MKKNIKQWLLAGVGATLLASSLSVSAADLLESVKSSGTLKVALEGNYPPFNFKDAKTGEL 60 M KNIKQWLLAGVGA LLASSLSVSAADLL+SVKSSGTLKVALEGNYPPFNFKD KTGEL Sbjct: 1 MNKNIKQWLLAGVGAALLASSLSVSAADLLQSVKSSGTLKVALEGNYPPFNFKDPKTGEL 60 Query: 61 TGFEVDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDP 120 TGFEVDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDP Sbjct: 61 TGFEVDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDP 120 Query: 121 YTLSSAQLIVRKDEKREFKSLDDLKGKKLGLGQGTNFEQKAKAVAGIDVRTYPGSPEYLA 180 YTLSSAQLIVRKDEKREFKSL+DLKGKKLGLGQGTNFEQKAKAV GIDVRTYPGSPEYLA Sbjct: 121 YTLSSAQLIVRKDEKREFKSLEDLKGKKLGLGQGTNFEQKAKAVPGIDVRTYPGSPEYLA 180 Query: 181 DLAAGRIDAALNDSLLVGYILKSTNLPLKG 210 DLAAGRIDAALNDSLLVGYILKSTNLPLK Sbjct: 181 DLAAGRIDAALNDSLLVGYILKSTNLPLKA 210 >ref|YP_004751936.1| putative amino acid ABC transporter periplasmic-binding protein [Collimonas fungivorans Ter331] gb|AEK61113.1| putative amino acid ABC transporter, periplasmic-binding protein [Collimonas fungivorans Ter331] Length = 267 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 164/203 (80%), Positives = 184/203 (90%), Gaps = 2/203 (0%) Query: 10 LAGVGATLLAS--SLSVSAADLLESVKSSGTLKVALEGNYPPFNFKDAKTGELTGFEVDV 67 L+ + A +L + +L+ AADLL++VK+ GTLKVA+EGNYPPFNFKD K+GELTGFEVDV Sbjct: 8 LSKIAAAVLIAGVTLNAFAADLLDTVKTRGTLKVAMEGNYPPFNFKDPKSGELTGFEVDV 67 Query: 68 AKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQ 127 AKLLAAKLGVKP FTTTEWSGILAGLGAGKYDVI+NQVGIT+ RQKAFDFS PYTLS+AQ Sbjct: 68 AKLLAAKLGVKPEFTTTEWSGILAGLGAGKYDVILNQVGITEARQKAFDFSQPYTLSTAQ 127 Query: 128 LIVRKDEKREFKSLDDLKGKKLGLGQGTNFEQKAKAVAGIDVRTYPGSPEYLADLAAGRI 187 LIVRKDEKR F +L+ LKG KLGLGQGTNFEQKAKAVAGIDV+TYPGSPEYLADLA+GRI Sbjct: 128 LIVRKDEKRSFPTLESLKGYKLGLGQGTNFEQKAKAVAGIDVKTYPGSPEYLADLASGRI 187 Query: 188 DAALNDSLLVGYILKSTNLPLKG 210 DAALND LLVGY+LKS+NLPLK Sbjct: 188 DAALNDRLLVGYLLKSSNLPLKA 210 >ref|ZP_08275610.1| putative amino acid ABC transporter, periplasmic-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30921.1| putative amino acid ABC transporter, periplasmic-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 268 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 143/203 (70%), Positives = 175/203 (86%), Gaps = 2/203 (0%) Query: 10 LAGVGATLLASSLSVSA--ADLLESVKSSGTLKVALEGNYPPFNFKDAKTGELTGFEVDV 67 LAG+ LL S L V A ADLL +V++ GTLKV +EG YPPFNF+D T L+GFE+DV Sbjct: 9 LAGLMTALLFSGLVVPAHAADLLATVQARGTLKVGVEGTYPPFNFRDTTTRALSGFEIDV 68 Query: 68 AKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQ 127 A+LLAAK+G+KP FTT EWSGILAGL AGKYDVI+NQVGIT +R+ +FDFSDPYT SSAQ Sbjct: 69 ARLLAAKMGLKPEFTTIEWSGILAGLSAGKYDVILNQVGITPQREASFDFSDPYTRSSAQ 128 Query: 128 LIVRKDEKREFKSLDDLKGKKLGLGQGTNFEQKAKAVAGIDVRTYPGSPEYLADLAAGRI 187 LIVRK+E+R+F SLDDLKGKKLG+GQGTN+E++AKAVAG+DV++YPG+PEYL DLAAGR+ Sbjct: 129 LIVRKNEQRQFTSLDDLKGKKLGVGQGTNYEERAKAVAGVDVKSYPGAPEYLQDLAAGRV 188 Query: 188 DAALNDSLLVGYILKSTNLPLKG 210 DAALNDSL+V Y+LK++ LP+K Sbjct: 189 DAALNDSLMVSYLLKASPLPIKA 211 >ref|YP_549943.1| extracellular solute-binding protein [Polaromonas sp. JS666] gb|ABE45045.1| amino acid ABC transporter substrate-binding protein, PAAT family [Polaromonas sp. JS666] Length = 266 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 136/206 (66%), Positives = 162/206 (78%), Gaps = 2/206 (0%) Query: 4 NIKQWLLAGVGATLLASSLSVSAADLLESVKSSGTLKVALEGNYPPFNFKDAKTGELTGF 63 NI++ L + + L + AADLL++VK GTLKVALEG YPPFN+K+ +L GF Sbjct: 5 NIRKALASTILVALALGAGIAHAADLLDTVKQRGTLKVALEGTYPPFNYKE--NDKLAGF 62 Query: 64 EVDVAKLLAAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTL 123 EV++A LA KLGVK FTT+EWS ILAGL AGKYDV+INQVGITD+R++ FDFS+PYT+ Sbjct: 63 EVELANALAQKLGVKAEFTTSEWSAILAGLQAGKYDVVINQVGITDKRKETFDFSEPYTI 122 Query: 124 SSAQLIVRKDEKREFKSLDDLKGKKLGLGQGTNFEQKAKAVAGIDVRTYPGSPEYLADLA 183 SS QLI+RKDEKR FK+L DLKGKKLGLGQGTNF AK V ID++TYPG+ EYL DLA Sbjct: 123 SSPQLIIRKDEKRVFKTLADLKGKKLGLGQGTNFADMAKKVGDIDIKTYPGAQEYLQDLA 182 Query: 184 AGRIDAALNDSLLVGYILKSTNLPLK 209 GRIDAALNDSLL+ YI+K T LPLK Sbjct: 183 LGRIDAALNDSLLIPYIVKQTKLPLK 208 >ref|YP_003604895.1| extracellular solute-binding protein family 3 [Burkholderia sp. CCGE1002] gb|ADG15384.1| extracellular solute-binding protein family 3 [Burkholderia sp. CCGE1002] Length = 264 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 129/197 (65%), Positives = 163/197 (82%), Gaps = 3/197 (1%) Query: 13 VGATLLASSLSVSAADLLESVKSSGTLKVALEGNYPPFNFKDAKTGELTGFEVDVAKLLA 72 +GA+L S+++ A DLL+ VK GTL+V LEG +PPFN K A +GEL G++VD+AK +A Sbjct: 15 IGASL--SAVAAHAEDLLDQVKQRGTLRVGLEGTFPPFNSK-APSGELVGYDVDIAKAVA 71 Query: 73 AKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRK 132 AKLGVKPVF TTEWSGI+AGL AGK+DVI+NQVGITD R++ DFS YT S+AQLI RK Sbjct: 72 AKLGVKPVFVTTEWSGIIAGLQAGKFDVIVNQVGITDARKQTLDFSPAYTYSAAQLIQRK 131 Query: 133 DEKREFKSLDDLKGKKLGLGQGTNFEQKAKAVAGIDVRTYPGSPEYLADLAAGRIDAALN 192 D+ R+F SL+DLKGKKLG+G GTN+ AK+V GIDV+TYPG+PEYL DLAAGR+DAALN Sbjct: 132 DDTRQFTSLEDLKGKKLGVGLGTNYMDMAKSVPGIDVKTYPGAPEYLRDLAAGRLDAALN 191 Query: 193 DSLLVGYILKSTNLPLK 209 D L++ Y+LK++NLPL+ Sbjct: 192 DRLMLAYLLKNSNLPLR 208