BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1537.p         (60 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775564.1| amino acid ABC transporter/signal transducti...   101   4e-20
ref|YP_004751936.1| putative amino acid ABC transporter periplas...    84   5e-15
ref|ZP_08275610.1| putative amino acid ABC transporter, periplas...    79   2e-13
ref|ZP_03696905.1| extracellular solute-binding protein family 3...    71   6e-11
ref|YP_004848737.1| amino acid ABC transporter periplasmic amino...    70   7e-11

>ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic
           protein/domain-containing protein [Herbaspirillum
           seropedicae SmR1]
 emb|CAP19663.1| periplasmic component protein [Herbaspirillum seropedicae]
 gb|ADJ63656.1| ABC-type amino acid transport/signal transduction system,
           periplasmic component/domain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 2   RAGSPIGTVDKIGIPFRKGNPQFKAALNKALADILKDGSFKAASLKWFGIDVSQPPKAQ 60
           +AGSPIG VDKIGIPFRKGNP+FKAALNKALADI  DGSFKAAS KWFGIDVSQPPKAQ
Sbjct: 209 KAGSPIGAVDKIGIPFRKGNPEFKAALNKALADIKADGSFKAASEKWFGIDVSQPPKAQ 267


>ref|YP_004751936.1| putative amino acid ABC transporter periplasmic-binding protein
           [Collimonas fungivorans Ter331]
 gb|AEK61113.1| putative amino acid ABC transporter, periplasmic-binding protein
           [Collimonas fungivorans Ter331]
          Length = 267

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 2   RAGSPIGTVDKIGIPFRKGNPQFKAALNKALADILKDGSFKAASLKWFGIDVSQPPKAQ 60
           +AG+  G +DKIGIPF+KGNP+F+AALNKAL +ILKDGSFK  S KWFG DVS+ P AQ
Sbjct: 209 KAGATFGDIDKIGIPFQKGNPKFEAALNKALDEILKDGSFKQVSFKWFGFDVSKAPSAQ 267


>ref|ZP_08275610.1| putative amino acid ABC transporter, periplasmic-binding protein
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30921.1| putative amino acid ABC transporter, periplasmic-binding protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 268

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2   RAGSPIGTVDKIGIPFRKGNPQFKAALNKALADILKDGSFKAASLKWFGIDVSQPPKAQ 60
           +AG+PIG V ++GIPF KGNPQFKAALN ALA I+ DGSF   S++WFGIDVS+ P A+
Sbjct: 210 KAGAPIGEVAQMGIPFVKGNPQFKAALNTALAAIIADGSFAKVSMQWFGIDVSKAPAAK 268


>ref|ZP_03696905.1| extracellular solute-binding protein family 3 [Lutiella nitroferrum
           2002]
 gb|EEG10425.1| extracellular solute-binding protein family 3 [Lutiella nitroferrum
           2002]
          Length = 259

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 2   RAGSPIGTVDKIGIPFRKGNPQFKAALNKALADILKDGSFKAASLKWFGIDVSQPP 57
           +AG+ +GT  ++GIPF KGNP+FKAA++ AL  + KDG+FK  S+KWFGIDVS+ P
Sbjct: 201 KAGAAVGTTTQMGIPFAKGNPKFKAAIDGALTSLHKDGTFKKISVKWFGIDVSKAP 256


>ref|YP_004848737.1| amino acid ABC transporter periplasmic amino acid-binding protein
           [Pseudogulbenkiania sp. NH8B]
 dbj|BAK78323.1| amino acid ABC transporter, periplasmic amino acid-binding protein
           [Pseudogulbenkiania sp. NH8B]
          Length = 259

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 45/56 (80%)

Query: 2   RAGSPIGTVDKIGIPFRKGNPQFKAALNKALADILKDGSFKAASLKWFGIDVSQPP 57
           +AG+ +GT  ++GIPF KGNP+FKAA++ AL  + KDG+FK  S+KWFGIDVS+ P
Sbjct: 201 KAGAAVGTTTQMGIPFAKGNPKFKAAIDGALTSLHKDGTFKKISVKWFGIDVSKAP 256