BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1536.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775563.1| amino acid ABC transporter permease [Herbasp... 343 1e-92 ref|YP_004751935.1| putative amino acid ABC transporter permease... 305 3e-81 ref|YP_004418145.1| amino acid ABC transporter, permease protein... 284 7e-75 ref|ZP_08275609.1| ABC-type amino acid transport system, permeas... 266 2e-69 ref|YP_002795610.1| amino acid ABC transporter, permease protein... 246 2e-63 >ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63655.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 197/218 (90%), Positives = 211/218 (96%) Query: 1 MEIWDLLRQAAPVMLRGVGYTLLFALSSMLGALVLGFVLAVARIVPWKFVHWPAAVYVSM 60 MEI +LL+QAAP + +GVGYTLLFAL+SMLG LVLGFVLAVARIVPW+ +HWPAA+YVSM Sbjct: 3 MEILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSM 62 Query: 61 MRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNA 120 MRGTPLLVQIFVVYYGLPG+GIEFSPLTAGVLTLSLNA AYLSESLRGAILGVT GQWNA Sbjct: 63 MRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNA 122 Query: 121 SYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 180 ++SVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV Sbjct: 123 AFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 182 Query: 181 TFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAHQ 218 TFRPLPLY+AAAAIYW+LSLCFEALQHRLEK+LGKAHQ Sbjct: 183 TFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQ 220 >ref|YP_004751935.1| putative amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61112.1| putative amino acid ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 220 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 175/218 (80%), Positives = 199/218 (91%) Query: 1 MEIWDLLRQAAPVMLRGVGYTLLFALSSMLGALVLGFVLAVARIVPWKFVHWPAAVYVSM 60 ME+ DLL+QAAP +LRGVGYTL+FA++SMLG L+LGF LA+ARI+P + WPA+VYVS+ Sbjct: 1 MELLDLLQQAAPTLLRGVGYTLVFAVASMLGGLLLGFPLAIARILPSRLARWPASVYVSL 60 Query: 61 MRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNA 120 MRGTPLLVQIFV+YYGLP IGI FSPLTAG+L LSLNAGAYLSESLRGAILGV GQW A Sbjct: 61 MRGTPLLVQIFVIYYGLPSIGISFSPLTAGILALSLNAGAYLSESLRGAILGVHTGQWAA 120 Query: 121 SYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 180 SYS+GL Y+QTLR+I++PQA+RIAVPSMSNTLISLIKDTSLVSVITVTELMLATKE+IAV Sbjct: 121 SYSIGLNYWQTLRHIVIPQAIRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEIIAV 180 Query: 181 TFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAHQ 218 TFRPLPLYLAAAAIYW LSLCFE LQ RLE +LG+AH+ Sbjct: 181 TFRPLPLYLAAAAIYWCLSLCFERLQSRLEDKLGQAHK 218 >ref|YP_004418145.1| amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family [Pusillimonas sp. T7-7] gb|AEC21521.1| amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family [Pusillimonas sp. T7-7] Length = 220 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 152/219 (69%), Positives = 187/219 (85%) Query: 1 MEIWDLLRQAAPVMLRGVGYTLLFALSSMLGALVLGFVLAVARIVPWKFVHWPAAVYVSM 60 M +DL+ A P++L+G GYTL+FA S+M G L++GFVLAV RI+P ++ PA VYVSM Sbjct: 1 MNFFDLMVLAGPILLKGTGYTLIFAFSAMFGGLLVGFVLAVLRIIPSRWTQIPATVYVSM 60 Query: 61 MRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNA 120 MRGTPLLVQ+F++YYGLP IGI F PLTAGVL LSLNAGAY+SESLRGAI+G++ GQW+A Sbjct: 61 MRGTPLLVQVFIIYYGLPSIGISFDPLTAGVLALSLNAGAYISESLRGAIVGISRGQWSA 120 Query: 121 SYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 180 YS+GL Y+Q L Y+++PQA+R+AVPSMSN+LISLIKDTSLVSVITVTEL+LATK+VIA Sbjct: 121 GYSLGLNYWQNLHYVVMPQALRLAVPSMSNSLISLIKDTSLVSVITVTELLLATKDVIAT 180 Query: 181 TFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAHQH 219 TF+PLPLYLAAA IYWILSLC E +Q RLEK G++ +H Sbjct: 181 TFQPLPLYLAAAGIYWILSLCLEQVQARLEKHYGRSARH 219 >ref|ZP_08275609.1| ABC-type amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF30920.1| ABC-type amino acid transport system, permease component [Oxalobacteraceae bacterium IMCC9480] Length = 219 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 157/219 (71%), Positives = 193/219 (88%) Query: 1 MEIWDLLRQAAPVMLRGVGYTLLFALSSMLGALVLGFVLAVARIVPWKFVHWPAAVYVSM 60 M + +LL AAP+ML+GV YT+LFAL+SM+G L+LG +LA+AR+ PW+ + WPAAVYVS+ Sbjct: 1 MNLTELLTLAAPIMLQGVLYTVLFALASMVGGLLLGALLAMARLQPWRVLQWPAAVYVSL 60 Query: 61 MRGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNA 120 +RGTPLLVQ+F++YYGLP IGIEFSP++AG+L LSLNAGA+LSESLRGA+ GV+ GQW+A Sbjct: 61 IRGTPLLVQVFLIYYGLPSIGIEFSPVSAGILALSLNAGAFLSESLRGAVQGVSAGQWSA 120 Query: 121 SYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAV 180 SYS+GLT+ QTLR+++ PQA+RIAVPSM NTLISLIKDTSLVSVITVTELMLATKEVIA Sbjct: 121 SYSLGLTWVQTLRFVVAPQALRIAVPSMGNTLISLIKDTSLVSVITVTELMLATKEVIAT 180 Query: 181 TFRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAHQH 219 TFRPLPLY+ AA +YW LS+ FE +Q RLEKRL +AHQ Sbjct: 181 TFRPLPLYVTAALLYWCLSMLFEVVQRRLEKRLQRAHQQ 219 >ref|YP_002795610.1| amino acid ABC transporter, permease protein [Laribacter hongkongensis HLHK9] gb|ACO74601.1| probable amino acid ABC transporter, permease protein [Laribacter hongkongensis HLHK9] Length = 219 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 143/217 (65%), Positives = 179/217 (82%), Gaps = 3/217 (1%) Query: 2 EIWDLLRQAAPVMLRGVGYTLLFALSSMLGALVLGFVLAVARIVPWKFVHWPAAVYVSMM 61 E+W L A PVML+G +TLLFA+SSM L+LGF +A+ R+ + AA+YVS M Sbjct: 5 ELWAL---ALPVMLQGAWHTLLFAISSMALGLLLGFAIALVRLTRLPVLAPLAALYVSAM 61 Query: 62 RGTPLLVQIFVVYYGLPGIGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTHGQWNAS 121 RGTPLLVQIFV+YYGLPGIGIEF P+TAG+L L++NA AYLSES+RGAI GV+ GQW A+ Sbjct: 62 RGTPLLVQIFVIYYGLPGIGIEFDPVTAGILALTMNAAAYLSESMRGAIAGVSTGQWQAA 121 Query: 122 YSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 181 S+G +++Q++R+II PQA+R+AVPS+SNTLISLIKDTSLVSVITV+ELMLATKE+IA T Sbjct: 122 SSLGFSWWQSMRFIIAPQALRLAVPSLSNTLISLIKDTSLVSVITVSELMLATKEIIAQT 181 Query: 182 FRPLPLYLAAAAIYWILSLCFEALQHRLEKRLGKAHQ 218 ++PLPLYLAAA IYW++SL FE +Q R+E RL AHQ Sbjct: 182 YQPLPLYLAAAGIYWLMSLAFEQVQKRVENRLETAHQ 218