BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1532.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775559.1| secreted protein [Herbaspirillum seropedicae...   207   7e-52
ref|YP_273332.1| hypothetical protein PSPPH_1062 [Pseudomonas sy...    62   5e-08
ref|YP_003881281.1| flagellar protein flhE [Dickeya dadantii 393...    60   1e-07
ref|ZP_07265772.1| hypothetical protein Psyrps6_22256 [Pseudomon...    57   1e-06
ref|YP_003040722.1| flagellar protein [Photorhabdus asymbiotica ...    56   2e-06

>ref|YP_003775559.1| secreted protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63651.1| secreted protein [Herbaspirillum seropedicae SmR1]
          Length = 186

 Score =  207 bits (526), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 107/164 (65%), Positives = 132/164 (80%), Gaps = 1/164 (0%)

Query: 26  QTYADRNLSMPAAGSEGSKRPIVIISPVIPNGPSPLSIAPPQGGPAGAYASDEPGPDIRA 85
           Q+YADRNLS+P  G+EG +RPIVI+SP++P  P+ +  A P  GP G+YAS+  GPDIRA
Sbjct: 24  QSYADRNLSLPQGGNEG-RRPIVILSPIVPAAPAAVPAATPTNGPVGSYASEAAGPDIRA 82

Query: 86  RNADYITQFKVVGQIPAGAIIRKVSWRYTLASKPPGFEARLCWKDAGVCWDVSQANAGST 145
           RNADY+TQF+VVG +P G+ I KVSWRYT++ KPPGFEA LCW+DAG CW V+ AN GST
Sbjct: 83  RNADYVTQFRVVGTVPPGSTISKVSWRYTVSHKPPGFEALLCWQDAGSCWHVTDANTGST 142

Query: 146 EFFNGRDAGQPFQLHYSVRGTARTGEPPIKGEMNQVIVTFDAPG 189
           +FFNGRDA +PFQL+Y VR  A  GE PIKGE+NQVIVT++ PG
Sbjct: 143 DFFNGRDASKPFQLYYRVRARAAVGEAPIKGEINQVIVTYNIPG 186


>ref|YP_273332.1| hypothetical protein PSPPH_1062 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gb|AAZ36942.1| unnamed protein product [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 158

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 4/113 (3%)

Query: 71  AGAYASDEPGPDIRARNADYITQFKVVGQIPAGAIIRKVSWRYTLASKPPGFEARLCWKD 130
           AG Y S    P I ++   +     V   +P  A I+ VSW + +A  P G E  LC + 
Sbjct: 48  AGNYQSSVALPVIHSKGYMHTAALPVSRHVPPVATIKNVSWNWNVAGWPQGLEVYLC-QG 106

Query: 131 AGVCWDVSQANAGSTEFFNGRDAGQPFQLHYSVRGTARTGEPPIKGEMNQVIV 183
           A VC +VS+   GST FF  + A + F  +Y+++    TG  P+ G+  ++ V
Sbjct: 107 ASVCLNVSRQRTGSTTFFGNQLASRTF--YYTMK-IGETGRVPVAGQQGRITV 156


>ref|YP_003881281.1| flagellar protein flhE [Dickeya dadantii 3937]
 gb|ADM96724.1| Flagellar protein flhE [Dickeya dadantii 3937]
          Length = 145

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 71  AGAYASDEPGPDIRARNADYITQFKVVGQIPAGAIIRKVSWRYTLASKPPGFEARLCWKD 130
           AG+Y S    P + ARN        V G  P    I  VSW + +   P G    LC   
Sbjct: 33  AGSYTSSVVLPTVYARNFLETVNVPVKGNPPTNGAITSVSWTWNVVGFPQGLSVYLCQGS 92

Query: 131 AGVCWDVSQANAGSTEFFNGRDAGQPFQLHYSVRGTARTGEPPIKGEMNQVIVTF 185
              C DVS+    ST+ FNG++  QPF     V      G  P+ G+  Q+IV +
Sbjct: 93  TSNCIDVSRTRRMSTDAFNGKNPTQPFIFAMRV---GSGGTVPVSGQQAQIIVNW 144


>ref|ZP_07265772.1| hypothetical protein Psyrps6_22256 [Pseudomonas syringae pv.
           syringae 642]
          Length = 133

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 71  AGAYASDEPGPDIRARNADYITQFKVVGQIPAGAIIRKVSWRYTLASKPPGFEARLCWKD 130
           AG Y S    P + ++   +  +  V    PA A I+ VSW + +   P G E  LC + 
Sbjct: 23  AGNYQSSVALPVVHSKGYVHTAELPVSRHAPAAATIKSVSWNWNVVGWPQGLEVYLC-QG 81

Query: 131 AGVCWDVSQANAGSTEFFNGRDAGQPFQLHYSVRGTARTGEPPIKGEMNQVIV 183
             VC +VS+   GST FF  + A + F   Y       TG  P+ G+  ++ V
Sbjct: 82  PSVCLNVSRQRTGSTTFFGNQLASRKF---YYTMKVGDTGRVPVAGQQGRITV 131


>ref|YP_003040722.1| flagellar protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 emb|CAQ83978.1| flagellar protein [Photorhabdus asymbiotica]
          Length = 140

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 71  AGAYASDEPGPDIRARNADYITQFKVVGQIPAGAIIRKVSWRYTLASKPPGFEARLCWKD 130
           +G+Y      P I +RN        VVG  PA   I  VSW + +   P G    LC  +
Sbjct: 28  SGSYQPSVTLPTIYSRNFTETAYLPVVGSPPATGSITNVSWTWNVVGWPQGLSVYLCQGN 87

Query: 131 AGVCWDVSQANAGSTEFFNGRDAGQPFQLHYSVRGTARTGEPPIKGEMNQVIVTF 185
              C D+S+    ST  FN     Q  Q  Y++R  A  G  P+ G+  +VIV++
Sbjct: 88  TSNCIDISRVRRMSTTAFNNSSPTQ--QFFYAMR-VASGGTVPVAGQTGEVIVSW 139