BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1531.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775558.1| ATP-dependent serine protease [Herbaspirillu... 835 0.0 ref|YP_004753073.1| DNA repair protein [Collimonas fungivorans T... 783 0.0 ref|YP_001353216.1| DNA repair protein RadA [Janthinobacterium s... 767 0.0 ref|YP_001100039.1| DNA repair protein RadA [Herminiimonas arsen... 756 0.0 ref|ZP_08273285.1| DNA repair protein RadA [Oxalobacteraceae bac... 754 0.0 >ref|YP_003775558.1| ATP-dependent serine protease [Herbaspirillum seropedicae SmR1] gb|ADJ63650.1| ATP-dependent serine protease protein [Herbaspirillum seropedicae SmR1] Length = 461 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 451/461 (97%), Positives = 457/461 (99%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVESGGGNRYSSTPQGLAQTAPVL 60 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVE GGNRYS++PQ LAQTAPVL Sbjct: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVEPAGGNRYSNSPQSLAQTAPVL 60 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK Sbjct: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 Query: 121 VLYVSGEESGSQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQT+YS Sbjct: 121 VLYVSGEESGAQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTLYS 180 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ Sbjct: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG Sbjct: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 Query: 421 SIAVIPKANAPKQAIEGLKVIPVERIDDALQKAREIDDYAA 461 SIAVIPKANAPKQAIEGLKVI VERIDDALQKAREIDD+A+ Sbjct: 421 SIAVIPKANAPKQAIEGLKVIAVERIDDALQKAREIDDHAS 461 >ref|YP_004753073.1| DNA repair protein [Collimonas fungivorans Ter331] gb|AEK62250.1| DNA repair protein [Collimonas fungivorans Ter331] Length = 456 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 418/457 (91%), Positives = 440/457 (96%), Gaps = 1/457 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVESGGGNRYSSTPQGLAQTAPVL 60 MAK KTNYTCTECGGV+NKW GQCP+CGQWNTLVETLVE+ G NR+S+ QGLAQTAPV+ Sbjct: 1 MAKAKTNYTCTECGGVANKWTGQCPSCGQWNTLVETLVEAVG-NRFSNQHQGLAQTAPVM 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 +LADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+S+LKK Sbjct: 60 TLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKLKK 119 Query: 121 VLYVSGEESGSQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDA++L+LQAEIQLEKIL TL EHKPEVAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNTLVEHKPEVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTRVAK SGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRVAKQSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+NQVPGSCVMVTQ Sbjct: 240 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SHVPNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDASHVPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAINSSMRN+PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAINSSMRNRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIPVERIDDALQKAREID 457 SIA+IPKAN PKQ IEGLKVI VERIDDAL K R+ + Sbjct: 420 SIAMIPKANMPKQEIEGLKVIGVERIDDALSKIRDAE 456 >ref|YP_001353216.1| DNA repair protein RadA [Janthinobacterium sp. Marseille] gb|ABR88631.1| RadA DNA repair protein [Janthinobacterium sp. Marseille] Length = 456 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 407/455 (89%), Positives = 436/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVESGGGNRYSSTPQGLAQTAPVL 60 MAK KTNYTC+ECGG+SNKW GQCPACG WNTLVET+VESG NR+S QGLAQTAPVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPACGSWNTLVETVVESGS-NRFSVQHQGLAQTAPVL 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+SR+KK Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSRIKK 119 Query: 121 VLYVSGEESGSQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDA++L+LQAEIQLEKIL TLAEHKP+VAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILTTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTR+AK +GITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+N VPG+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNPVPGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIPVERIDDALQKARE 455 S+A+IPK+NAPKQ IEGL +I VERID+AL + RE Sbjct: 420 SLALIPKSNAPKQKIEGLTIIGVERIDEALNRVRE 454 >ref|YP_001100039.1| DNA repair protein RadA [Herminiimonas arsenicoxydans] emb|CAL61914.1| DNA repair protein RadA (DNA repair protein Sms) [Herminiimonas arsenicoxydans] Length = 456 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 400/455 (87%), Positives = 435/455 (95%), Gaps = 1/455 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVESGGGNRYSSTPQGLAQTAPVL 60 MAK KTNYTC+ECGG+SNKW GQCP+C WNTLVET+VE+G NRYS+ QGLAQ+APVL Sbjct: 1 MAKAKTNYTCSECGGISNKWGGQCPSCNAWNTLVETVVETGT-NRYSAQHQGLAQSAPVL 59 Query: 61 SLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRLKK 120 SLADIEAIDVPRFGTGIEEFDRVLGGGLV GGV LIGGDPGIGKSTLLLQALAN+S++KK Sbjct: 60 SLADIEAIDVPRFGTGIEEFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLSKIKK 119 Query: 121 VLYVSGEESGSQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTIYS 180 VLYVSGEESG+QIALRAKRLAVDA++L+LQAEIQLEKIL TLAEHKP+VAVIDSIQT+YS Sbjct: 120 VLYVSGEESGAQIALRAKRLAVDAKDLKLQAEIQLEKILNTLAEHKPDVAVIDSIQTVYS 179 Query: 181 DALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 240 DAL+SAPGSVAQVRECAAQLTR+AK +G+TIIMVGHVTKEGALAGPRVLEHIVDTVLYFE Sbjct: 180 DALSSAPGSVAQVRECAAQLTRIAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLYFE 239 Query: 241 GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQ 300 GDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH++ V G+CVMVTQ Sbjct: 240 GDTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDSPVSGACVMVTQ 299 Query: 301 EGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVG 360 EGTRPLLVEIQALVD+SH+PNARRLSVGLEQNRLAMLLAVLHRHAG+AAFDQDVFINAVG Sbjct: 300 EGTRPLLVEIQALVDTSHLPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVG 359 Query: 361 GVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 420 GVKITEPAADLAVLLAI+SSMR++PLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF Sbjct: 360 GVKITEPAADLAVLLAIHSSMRSRPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKLGF 419 Query: 421 SIAVIPKANAPKQAIEGLKVIPVERIDDALQKARE 455 S+A+IPK+NAPKQ IEGL +I VERID+AL + RE Sbjct: 420 SLALIPKSNAPKQKIEGLTIIAVERIDEALNRVRE 454 >ref|ZP_08273285.1| DNA repair protein RadA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33245.1| DNA repair protein RadA [Oxalobacteraceae bacterium IMCC9480] Length = 460 Score = 754 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 405/457 (88%), Positives = 434/457 (94%), Gaps = 2/457 (0%) Query: 1 MAKVKTNYTCTECGGVSNKWAGQCPACGQWNTLVETLVESGGGNRYS--STPQGLAQTAP 58 MAKVKTN+TC+ECGG+SNKW GQCP+CGQWN+LVET +ES G NR S + P LAQTAP Sbjct: 1 MAKVKTNFTCSECGGISNKWTGQCPSCGQWNSLVETQIESAGINRLSQQAAPVSLAQTAP 60 Query: 59 VLSLADIEAIDVPRFGTGIEEFDRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISRL 118 VLSLADIEA++VPRFGTGIEEFDRVLGGGLVPGGV LIGGDPGIGKSTLLLQALAN+SR Sbjct: 61 VLSLADIEAVEVPRFGTGIEEFDRVLGGGLVPGGVVLIGGDPGIGKSTLLLQALANLSRS 120 Query: 119 KKVLYVSGEESGSQIALRAKRLAVDARELQLQAEIQLEKILATLAEHKPEVAVIDSIQTI 178 KKVLYVSGEESG+QIALRAKRLAVDA++LQLQAEIQLEKIL TLAEHKP+VAVIDSIQT+ Sbjct: 121 KKVLYVSGEESGAQIALRAKRLAVDAKDLQLQAEIQLEKILYTLAEHKPDVAVIDSIQTV 180 Query: 179 YSDALTSAPGSVAQVRECAAQLTRVAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLY 238 YSDAL+SAPGSVAQVRECAAQLTR AK +G+TIIMVGHVTKEGALAGPRVLEHIVDTVLY Sbjct: 181 YSDALSSAPGSVAQVRECAAQLTRTAKQTGVTIIMVGHVTKEGALAGPRVLEHIVDTVLY 240 Query: 239 FEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMV 298 FEGDTHSSFRLVRA KNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQH+NQVPGSCVMV Sbjct: 241 FEGDTHSSFRLVRAVKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMV 300 Query: 299 TQEGTRPLLVEIQALVDSSHVPNARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINA 358 TQEGTRPLLVEIQALVD+SH PNARRLSVGL+QNRLAMLLAVLHRHAGVAAFDQDVFINA Sbjct: 301 TQEGTRPLLVEIQALVDTSHAPNARRLSVGLDQNRLAMLLAVLHRHAGVAAFDQDVFINA 360 Query: 359 VGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 418 VGGVKITEPAADLAV+LAI SS+RNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL Sbjct: 361 VGGVKITEPAADLAVMLAIQSSLRNKPLPRGLVVFGEVGLAGEIRPAPRGQERLREAAKL 420 Query: 419 GFSIAVIPKANAPKQAIEGLKVIPVERIDDALQKARE 455 GFSIA+IPKANAPK +EGL +I VERID+AL+K R+ Sbjct: 421 GFSIAMIPKANAPKGKVEGLTIIAVERIDEALEKIRD 457