BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1530.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775557.1| alanine racemase [Herbaspirillum seropedicae... 619 e-175 ref|YP_004753074.1| alanine racemase [Collimonas fungivorans Ter... 495 e-138 ref|YP_001353215.1| alanine racemase [Janthinobacterium sp. Mars... 467 e-129 ref|ZP_04576554.1| alanine racemase [Oxalobacter formigenes HOxB... 457 e-126 ref|ZP_04578965.1| alanine racemase [Oxalobacter formigenes OXCC... 456 e-126 >ref|YP_003775557.1| alanine racemase [Herbaspirillum seropedicae SmR1] gb|ADJ63649.1| alanine racemase protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 308/359 (85%), Positives = 330/359 (91%) Query: 75 MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 134 MPRPIVASISISALQHNLAVARAHAP ARVWGVLKANGYGHGLERAMRGFA ADGLAL+E Sbjct: 1 MPRPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAAADGLALIE 60 Query: 135 PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 194 PDYAVRLRELGWTKPILLLEGFFDA+DLPVLA+HDIQFAVHC+EQIA LE F A+ H Sbjct: 61 PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAFTAAASLHA 120 Query: 195 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 254 HLKMNSGMNRLGFKPE + AA+AR+ KI SV SIT+MTHFANADDA NP LPL+EQVRRF Sbjct: 121 HLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQVRRF 180 Query: 255 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 314 QAG+EGL G RSLCNSAADLMH ELA+DWVRPG+MLYG TPGG SAADFGLRAAMTLES+ Sbjct: 181 QAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTLESR 240 Query: 315 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 374 IIG+Q +P GEAIGYGSRFVADKPM+IGVVACGYADGYPRHAP GTPVLVDG+KTGTVGR Sbjct: 241 IIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGTVGR 300 Query: 375 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVREVD 433 VSMDML VDLT +P A VGS+VELWG +LPIDEVA+AAGTIGYELMCALAPRVAVREVD Sbjct: 301 VSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCALAPRVAVREVD 359 >ref|YP_004753074.1| alanine racemase [Collimonas fungivorans Ter331] gb|AEK62251.1| Alanine racemase [Collimonas fungivorans Ter331] Length = 358 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 253/358 (70%), Positives = 288/358 (80%) Query: 75 MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 134 MPRP+VA+I ISAL HNL +A++HAP A++W V+KAN YGHGLER +RGFA+ADGLAL+E Sbjct: 1 MPRPLVATIDISALHHNLRIAKSHAPAAKIWAVVKANAYGHGLERGVRGFAEADGLALIE 60 Query: 135 PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 194 PD A+RLRELGW KPILLLEG FDA DL + R + FAVHC+EQIA LEQ V Sbjct: 61 PDNALRLRELGWQKPILLLEGIFDASDLETVVRARLDFAVHCNEQIAWLEQAALKGPLDV 120 Query: 195 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 254 HLKMNSGMNRLGFKPEA+ AA+ R+ + +VR IT+MTHFANADD LNP LPL +QV++F Sbjct: 121 HLKMNSGMNRLGFKPEAYRAAYQRLRAVPAVRKITLMTHFANADDPLNPGLPLQQQVQQF 180 Query: 255 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 314 + G GL RS+ NSAADLMH EL DWVRPGIMLYGATPGG+SA FGL+ AMTL S+ Sbjct: 181 EQGVSGLNEERSIANSAADLMHPELKSDWVRPGIMLYGATPGGASAEQFGLKPAMTLSSK 240 Query: 315 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 374 +IGVQ I G+AIGYGSRFVA PM IG VACGYADGYPRHAP GTPVLVDG++T TVGR Sbjct: 241 VIGVQRIGAGDAIGYGSRFVASAPMLIGAVACGYADGYPRHAPNGTPVLVDGMRTVTVGR 300 Query: 375 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVREV 432 VSMDM VDLT +P AGVGS V LWG LPIDEVA AAGTIGYELMCALA RV V E+ Sbjct: 301 VSMDMFSVDLTSVPGAGVGSAVTLWGDGLPIDEVAHAAGTIGYELMCALATRVKVVEL 358 >ref|YP_001353215.1| alanine racemase [Janthinobacterium sp. Marseille] sp|A6SY68|ALR_JANMA RecName: Full=Alanine racemase gb|ABR88832.1| alanine racemase [Janthinobacterium sp. Marseille] Length = 359 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 231/359 (64%), Positives = 277/359 (77%) Query: 75 MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 134 MPRP++A+I I+AL+ NLA+A+A AP+++ W V+KAN YGHGLER MRGFA ADGL L+E Sbjct: 1 MPRPLIATIDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGFAAADGLGLIE 60 Query: 135 PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 194 D A RLRELGW K ILLLEGFFDA D +LA H + +HC+EQ+ +LEQ V Sbjct: 61 LDAAARLRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQAKLRTQIDV 120 Query: 195 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 254 HLK+NSGMNRLGF P + AA+ R+ I +VR I+ +THFANA+D NP LP+ EQVRRF Sbjct: 121 HLKLNSGMNRLGFTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQEQVRRF 180 Query: 255 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 314 + T LPG +SL NSA DL+H A DW+RPGIMLYGATPG SA FGLRAAM+L S+ Sbjct: 181 KEATRDLPGEKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAAMSLHSE 240 Query: 315 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 374 IIGVQ I G+A+GYGS FVA PM IGVVACGYADGYPRHAP+GTPV+VDG+KT VGR Sbjct: 241 IIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYPRHAPSGTPVIVDGVKTRMVGR 300 Query: 375 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVREVD 433 VSMDM+ VDLT + + +GS+V LWG LPIDEVA AAGT+GYELMC LAPRV + EV+ Sbjct: 301 VSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGYELMCGLAPRVQIVEVN 359 >ref|ZP_04576554.1| alanine racemase [Oxalobacter formigenes HOxBLS] gb|EEO27516.1| alanine racemase [Oxalobacter formigenes HOxBLS] Length = 359 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 220/357 (61%), Positives = 275/357 (77%) Query: 75 MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 134 M RP+VASI I+A+QHNL++ R+ P A++W V+KAN YGHGLER++R F+DADG AL+E Sbjct: 1 MTRPLVASIDIAAMQHNLSLVRSTVPRAKIWAVVKANAYGHGLERSVRAFSDADGFALIE 60 Query: 135 PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 194 + A+ LRE+GW KPILLLEGFF +LP LAR++I FAVHCDEQI +LE+ D V Sbjct: 61 IEAAIHLREIGWKKPILLLEGFFYPHELPTLARYNIAFAVHCDEQIDMLEKSRLDMPVDV 120 Query: 195 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 254 HLKMN+GMNRLGF P + A R+ KI +VR I+ MTHFAN++ +P L + EQ+RRF Sbjct: 121 HLKMNTGMNRLGFLPSEYGKALERLKKIPNVRDISYMTHFANSEAKKHPLLSVKEQLRRF 180 Query: 255 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 314 + T+GL G R+L NS A L+H E+ DWVRPGIMLYG TPGG +AA++GL AMTL S+ Sbjct: 181 DSATQGLKGDRNLSNSGAILLHPEIRTDWVRPGIMLYGGTPGGKTAAEYGLEPAMTLSSE 240 Query: 315 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 374 II +Q I G++IGYGS F A PM+ GVVACGYADGYPR AP GTP++VDG+KT VGR Sbjct: 241 IIQIQHIREGDSIGYGSIFTAKGPMKTGVVACGYADGYPRMAPEGTPIMVDGVKTRLVGR 300 Query: 375 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVRE 431 VSMDM+ VDLT +P A VGS+V LWG++LPIDEVA AAGT+GYELMCAL+ R + E Sbjct: 301 VSMDMITVDLTPVPDAHVGSKVTLWGKELPIDEVAEAAGTVGYELMCALSLRPRIVE 357 >ref|ZP_04578965.1| alanine racemase [Oxalobacter formigenes OXCC13] gb|EEO29938.1| alanine racemase [Oxalobacter formigenes OXCC13] Length = 359 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 215/357 (60%), Positives = 276/357 (77%) Query: 75 MPRPIVASISISALQHNLAVARAHAPNARVWGVLKANGYGHGLERAMRGFADADGLALVE 134 M RP+VA+I I+A+QHNL+V R+ P A++WGV+KAN YGHGLER++R DADG AL+E Sbjct: 1 MTRPLVANIDIAAMQHNLSVVRSTVPRAKIWGVVKANAYGHGLERSVRALNDADGFALIE 60 Query: 135 PDYAVRLRELGWTKPILLLEGFFDAEDLPVLARHDIQFAVHCDEQIALLEQFVTDAAFHV 194 + A+ LRE+GW KPILLLEGFF A +LP+LAR++I FAVHCDEQI +LE+ D V Sbjct: 61 MESAIHLREIGWKKPILLLEGFFYAHELPILARYNIAFAVHCDEQIDMLEKSRLDLPVDV 120 Query: 195 HLKMNSGMNRLGFKPEAFHAAHARVSKIASVRSITMMTHFANADDALNPSLPLSEQVRRF 254 HLKMN+GMNRLGF P + A+ R+ KI +VR I+ MTHFAN++ + + + + EQ++RF Sbjct: 121 HLKMNTGMNRLGFLPAEYSKAYERLKKIPNVREISHMTHFANSEVSGHKKMSVEEQLKRF 180 Query: 255 QAGTEGLPGARSLCNSAADLMHGELAHDWVRPGIMLYGATPGGSSAADFGLRAAMTLESQ 314 +G+ GLPG R+L NS A L+H +L DWVRPG+MLYG TPGG +A ++GL+ MTL S+ Sbjct: 181 DSGSAGLPGVRNLSNSGAILLHPQLRTDWVRPGVMLYGGTPGGKTAEEYGLKPVMTLSSE 240 Query: 315 IIGVQDIPPGEAIGYGSRFVADKPMRIGVVACGYADGYPRHAPTGTPVLVDGIKTGTVGR 374 II +Q+I G+++GYGS F A PM+IGVVACGYADGYPR AP GT V+VDG+KT VGR Sbjct: 241 IIQIQNINEGDSVGYGSIFTATGPMKIGVVACGYADGYPRMAPEGTHVIVDGVKTRLVGR 300 Query: 375 VSMDMLCVDLTELPRAGVGSRVELWGQQLPIDEVAFAAGTIGYELMCALAPRVAVRE 431 VSMDM+ VDLT + A VGS+V LWG +LPIDEVA AAGT+GYELMCAL+ R + E Sbjct: 301 VSMDMITVDLTPVKDAHVGSKVTLWGNELPIDEVAEAAGTVGYELMCALSLRPRIVE 357