BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1527.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum serop... 458 e-127 ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimon... 304 2e-80 ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinob... 303 3e-80 ref|YP_001100043.1| putative DNA polymerase-related protein, bac... 296 3e-78 ref|ZP_08273281.1| putative DNA polymerase-like protein, bacteri... 234 1e-59 >ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum seropedicae SmR1] gb|ADJ63646.1| uracil-DNA glycosylase protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 265/341 (77%), Positives = 289/341 (84%), Gaps = 3/341 (0%) Query: 1 MNEELKQDPGFGSSLALLDALGIGPVWVRRELAVEEVQAAQAEVPAQVTAAAVPAAPVDA 60 M+E++ Q+ GFGSSLALLDALGIGPVWVRRELAVEEVQ QA+ PA T A P V A Sbjct: 1 MSEQMNQENGFGSSLALLDALGIGPVWVRRELAVEEVQE-QAQQPASATPIAAPVEAVGA 59 Query: 61 PKVIAPEPVVAQSRP-PVAA-PVVQPSAPAARPAPAAPARPRAPVDEDGGPPSWLDEMDF 118 + + PV P PVA P VQ A APAAP APV E+GGPP+WLDEMDF Sbjct: 60 VEQPSRAPVEPAREPTPVAERPAVQAPPAGAPKAPAAPVPRSAPVQEEGGPPAWLDEMDF 119 Query: 119 GTSLEPMLIPDGDDEEDAPAVDPMIARIKAMDWPQLKQQVAECRRCGLCEGRKNTVFGVG 178 SLEP+LIP+G+D+E PAVDP+IARIK MDWPQLK+QVA+CRRCGLC+GRK TVFGVG Sbjct: 120 AASLEPVLIPEGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVG 179 Query: 179 DEKAKWLFIGEGPGRNEDQQGEPFVGPAGKLLDNMLLSMGVKRGENAYIANIVKCRPTDD 238 DEKAKWLFIGEGPGRNED QGEPFVGPAGKLLDNML+SMGVKRG+NAYIANIVKCRPTD+ Sbjct: 180 DEKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRPTDE 239 Query: 239 NGRDRPPSPQEVASCLPYLQRQIELIQPTVLVALGKTAANSLLGMDPATPVSRLRGTVHR 298 NGRDRPPSPQEVASCLPYLQRQIELIQPTVLVALGKTAA SLLG+DP TPV+RLRGTVHR Sbjct: 240 NGRDRPPSPQEVASCLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGTVHR 299 Query: 299 YQDLPLVVTYHPAYLLRTLTDKSKAWADLCLAMSTYAAQAR 339 YQ+LPLVVTYHPAYLLR+L DKSK WADLCLAMSTY AQAR Sbjct: 300 YQELPLVVTYHPAYLLRSLQDKSKTWADLCLAMSTYQAQAR 340 >ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] gb|AEK62255.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] Length = 282 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 184/323 (56%), Positives = 212/323 (65%), Gaps = 52/323 (16%) Query: 17 LLDALGIGPVWVRRELAVEEVQAAQAEVPAQVTAAAVPAAPVDAPKVIAPEPVVAQSRPP 76 LD +G+GP+W+RR+ A P++A + E + P Sbjct: 10 FLDEIGLGPLWLRRD------------------GGLASAEPIEADDMAPMEEI------P 45 Query: 77 VAAPVVQPSAPAARPAPAAPARPRAPVDEDGGPPSWLDEMDFGTSLEPMLIPDGD-DEED 135 AA Q +PAP A A V + +W D+ EP+ P Sbjct: 46 AAALHGQ------QPAPVAHA-----VQDKAEISAWGDD-------EPISAPSAAVHAAQ 87 Query: 136 APAVDPMIARIKAMDWPQLKQQVAECRRCGLCEGRKNTVFGVGDEKAKWLFIGEGPGRNE 195 +PA AMDW QL+ VA C CGLC+GRKNTVFGVGD KAKWLFIGEGPGRNE Sbjct: 88 SPA---------AMDWTQLQAAVAGCTACGLCQGRKNTVFGVGDSKAKWLFIGEGPGRNE 138 Query: 196 DQQGEPFVGPAGKLLDNMLLSMGVKRGENAYIANIVKCRPTDDNGRDRPPSPQEVASCLP 255 D QGEPFVGPAGKLLDN+LL+MG+KRG+NAYIANIVKCRPTD GRDRPP+ EVA+C+P Sbjct: 139 DIQGEPFVGPAGKLLDNILLAMGLKRGDNAYIANIVKCRPTDGTGRDRPPAADEVAACMP 198 Query: 256 YLQRQIELIQPTVLVALGKTAANSLLGMDPATPVSRLRGTVHRYQDLPLVVTYHPAYLLR 315 YLQRQIELIQPT+LVALGKTAA SLLG+D ATPVS+LRGTVHRY D PLVVTYHPAYLLR Sbjct: 199 YLQRQIELIQPTILVALGKTAALSLLGLDAATPVSKLRGTVHRYADRPLVVTYHPAYLLR 258 Query: 316 TLTDKSKAWADLCLAMSTYAAQA 338 L DK K W+DLCLAMS YA A Sbjct: 259 QLGDKGKVWSDLCLAMSAYANAA 281 >ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] gb|ABR88341.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] Length = 286 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 178/323 (55%), Positives = 211/323 (65%), Gaps = 47/323 (14%) Query: 16 ALLDALGIGPVWVRRELAVEEVQAAQAEVPAQVTAAAVPAAPVDAPKVIAPEPVVAQSRP 75 A L +G+GPVW +R A++ ++ A V + A Sbjct: 9 AFLQEMGLGPVWSQRSAALQALELESAPVVEMLEA------------------------- 43 Query: 76 PVAAPVVQPSAPAARPAPAAPARPRAPVDEDGGPPSWLDEMDFGTSLEPMLIPDGDDEED 135 V+ SAP PA P R + ++ +W DE T P+L P Sbjct: 44 ------VEVSAP-----PAVPLRQQVVAEQS--LSAWGDE----TPAAPVLAPAAVSAVL 86 Query: 136 APAVDPMIARIKAMDWPQLKQQVAECRRCGLCEGRKNTVFGVGDEKAKWLFIGEGPGRNE 195 PA D I +M W QLK+ V+ C CGLC+GR TVFGVGD+KAKWLF+GEGPGRNE Sbjct: 87 QPARD-----IASMGWEQLKEVVSNCTECGLCKGRTQTVFGVGDQKAKWLFVGEGPGRNE 141 Query: 196 DQQGEPFVGPAGKLLDNMLLSMGVKRGENAYIANIVKCRPTDDNGRDRPPSPQEVASCLP 255 D QGEPFVGPAGKLLDNM ++MG+KRGEN YIANIVKCRPTD+N RDR P QE +C+P Sbjct: 142 DFQGEPFVGPAGKLLDNMFIAMGLKRGENTYIANIVKCRPTDENKRDRAPVAQESDACMP 201 Query: 256 YLQRQIELIQPTVLVALGKTAANSLLGMDPATPVSRLRGTVHRYQDLPLVVTYHPAYLLR 315 YLQRQI L+ PTV+VALGKTAA SLL +DPATPV+RLRGTVHRY D+P+VVTYHPAYLLR Sbjct: 202 YLQRQIALVNPTVIVALGKTAALSLLKLDPATPVARLRGTVHRYADIPVVVTYHPAYLLR 261 Query: 316 TLTDKSKAWADLCLAMSTYAAQA 338 TL DKSKAWADLCLAM TYA +A Sbjct: 262 TLKDKSKAWADLCLAMQTYADRA 284 >ref|YP_001100043.1| putative DNA polymerase-related protein, bacteriophage-type [Herminiimonas arsenicoxydans] emb|CAL61918.1| Putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family [Herminiimonas arsenicoxydans] Length = 283 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 176/320 (55%), Positives = 201/320 (62%), Gaps = 50/320 (15%) Query: 16 ALLDALGIGPVWVRRELAVEEVQAAQAEVPAQVTAAAVPAAPVDAPKVIAPEPVVAQSRP 75 A L +G+GP+W +R +A P V A + AAP P + Sbjct: 9 AFLHEMGLGPIWSQRGIAA----------PQAVAEAVMDAAPAGVPSM------------ 46 Query: 76 PVAAPVVQPSAPAARPAPAAPARPRAPVDEDGGPPSWLDEMDFGTSLEPMLIPDGDDEED 135 A V SA A R PAA APV L + TS Sbjct: 47 QTTAVAVTTSAWAER-TPAAAVPLHAPVT--------LTASEVATSTS------------ 85 Query: 136 APAVDPMIARIKAMDWPQLKQQVAECRRCGLCEGRKNTVFGVGDEKAKWLFIGEGPGRNE 195 A I MDW QLK VA C +CGLC+ R TVFGVGD+KA+WLF+GEGPGRNE Sbjct: 86 -------FADIVQMDWAQLKSVVASCTQCGLCKSRTQTVFGVGDQKARWLFVGEGPGRNE 138 Query: 196 DQQGEPFVGPAGKLLDNMLLSMGVKRGENAYIANIVKCRPTDDNGRDRPPSPQEVASCLP 255 D QGEPFVGPAGKLLDNM +MG+KRGEN YIANIVKCRP D DRPP+ +EVA+C+P Sbjct: 139 DFQGEPFVGPAGKLLDNMFGAMGLKRGENTYIANIVKCRPIDAGKHDRPPAAEEVAACIP 198 Query: 256 YLQRQIELIQPTVLVALGKTAANSLLGMDPATPVSRLRGTVHRYQDLPLVVTYHPAYLLR 315 YL+RQI LI+PTV+VALGKTAA SLL +DPATPV +LRGTVHRY DLPL+VTYHPAYLLR Sbjct: 199 YLERQIALIKPTVIVALGKTAAISLLKLDPATPVGKLRGTVHRYADLPLIVTYHPAYLLR 258 Query: 316 TLTDKSKAWADLCLAMSTYA 335 L DKSKAWADLCLAM TYA Sbjct: 259 NLKDKSKAWADLCLAMQTYA 278 >ref|ZP_08273281.1| putative DNA polymerase-like protein, bacteriophage-type protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33241.1| putative DNA polymerase-like protein, bacteriophage-type protein [Oxalobacteraceae bacterium IMCC9480] Length = 289 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 123/198 (62%), Positives = 144/198 (72%) Query: 139 VDPMIARIKAMDWPQLKQQVAECRRCGLCEGRKNTVFGVGDEKAKWLFIGEGPGRNEDQQ 198 VD A I M W +L+ VA C RC LC+ RK V G GD+K WLF+GEGPG EDQQ Sbjct: 86 VDEGAAAIARMSWQELELAVASCTRCALCKNRKQAVLGAGDQKPGWLFVGEGPGHVEDQQ 145 Query: 199 GEPFVGPAGKLLDNMLLSMGVKRGENAYIANIVKCRPTDDNGRDRPPSPQEVASCLPYLQ 258 GEPFVGPAGKLLDNMLL++ + RGEN Y+AN VKCRP +G+DRPPS E A+C PYL+ Sbjct: 146 GEPFVGPAGKLLDNMLLALDLPRGENNYLANAVKCRPVGADGKDRPPSADESAACRPYLE 205 Query: 259 RQIELIQPTVLVALGKTAANSLLGMDPATPVSRLRGTVHRYQDLPLVVTYHPAYLLRTLT 318 RQI L+QP V+VALGK AA SLLG DP V+ LR HRY +P+VVTYHPAYLLR Sbjct: 206 RQIALLQPAVIVALGKVAALSLLGGDPKIAVAALREHTHRYGSIPVVVTYHPAYLLRKPL 265 Query: 319 DKSKAWADLCLAMSTYAA 336 DK+K+W DLCLA YA+ Sbjct: 266 DKAKSWRDLCLAAQAYAS 283