BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1525.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775551.1| thioredoxin-like protein [Herbaspirillum ser...   253   5e-66
ref|YP_004753081.1| putative thioredoxin-like protein [Collimona...   173   9e-42
ref|YP_001100046.1| putative thioredoxin-like protein (partial) ...   141   4e-32
ref|YP_001353209.1| hypothetical protein mma_1519 [Janthinobacte...   135   2e-30
ref|ZP_04576568.1| conserved hypothetical protein [Oxalobacter f...   127   5e-28

>ref|YP_003775551.1| thioredoxin-like protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63643.1| thioredoxin-like protein [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  253 bits (647), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 128/142 (90%), Positives = 137/142 (96%)

Query: 1   MSYQKLDQTNRRPLAEALRNDTWVVACLCANWCGSCREYEAAFQAWATRYPQHHFVWIDI 60
           MSYQ LDQTNRR LAEALRNDTWVVACLCANWCGSCREY+AAF+AWA RYPQHHFVWIDI
Sbjct: 1   MSYQILDQTNRRQLAEALRNDTWVVACLCANWCGSCREYDAAFRAWAERYPQHHFVWIDI 60

Query: 61  EDQADLVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQREAAS 120
           EDQADLVG+LDIDNFPTLL+ERGATVAFFGPMEPDTRLAER+LLAQ++KSDAELQREA S
Sbjct: 61  EDQADLVGELDIDNFPTLLMERGATVAFFGPMEPDTRLAERLLLAQMEKSDAELQREAIS 120

Query: 121 SAERSTWQEDCSLLDKLADVIG 142
           SAER +WQ+DCSLLDKLADVIG
Sbjct: 121 SAERRSWQQDCSLLDKLADVIG 142


>ref|YP_004753081.1| putative thioredoxin-like protein [Collimonas fungivorans Ter331]
 gb|AEK62258.1| putative thioredoxin-like protein [Collimonas fungivorans Ter331]
          Length = 140

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/135 (66%), Positives = 104/135 (77%)

Query: 6   LDQTNRRPLAEALRNDTWVVACLCANWCGSCREYEAAFQAWATRYPQHHFVWIDIEDQAD 65
           LD  N + LA  L +D WV ACLCA WCGSCREY A F A A R+PQ  FVWIDIEDQA+
Sbjct: 6   LDNDNHQELAATLADDGWVAACLCAAWCGSCREYFANFTALAQRHPQVQFVWIDIEDQAE 65

Query: 66  LVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQREAASSAERS 125
           LVGDLD+DNFPTLLI+RG  VAF GP+E D RLAERILLAQ++K+  ELQ EA SSAER 
Sbjct: 66  LVGDLDVDNFPTLLIQRGDVVAFLGPVEMDLRLAERILLAQMEKNLPELQAEALSSAERR 125

Query: 126 TWQEDCSLLDKLADV 140
            WQ + +LL +LAD+
Sbjct: 126 HWQLEANLLRRLADI 140


>ref|YP_001100046.1| putative thioredoxin-like protein (partial) [Herminiimonas
           arsenicoxydans]
 emb|CAL61921.1| Putative thioredoxin [Herminiimonas arsenicoxydans]
          Length = 138

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/138 (50%), Positives = 93/138 (67%)

Query: 1   MSYQKLDQTNRRPLAEALRNDTWVVACLCANWCGSCREYEAAFQAWATRYPQHHFVWIDI 60
           MS   L+  N+  LA+ +++D WVVACLCA WC  C  Y   F   A ++P   F+WIDI
Sbjct: 1   MSSITLEPENQHQLAQRMQDDVWVVACLCAAWCDVCTSYRPGFDELAAQHPDKLFIWIDI 60

Query: 61  EDQADLVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQREAAS 120
           ED+ADL+GD D++NFPTLLI+RG  V F+G   PD R+A R++ A  DK+DAEL+ +A S
Sbjct: 61  EDRADLIGDFDVENFPTLLIQRGDDVMFYGTTIPDHRIAHRLITAHADKTDAELKMQAHS 120

Query: 121 SAERSTWQEDCSLLDKLA 138
           SAE  +WQ + +L   LA
Sbjct: 121 SAEYRSWQVERNLRKALA 138


>ref|YP_001353209.1| hypothetical protein mma_1519 [Janthinobacterium sp. Marseille]
 gb|ABR88704.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 138

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/138 (49%), Positives = 90/138 (65%)

Query: 1   MSYQKLDQTNRRPLAEALRNDTWVVACLCANWCGSCREYEAAFQAWATRYPQHHFVWIDI 60
           M+   L+  N++ LA+ +++D WVVACLCA WC  C  Y   F   A ++P   FVWIDI
Sbjct: 1   MASITLEPHNQQQLAQRMQDDVWVVACLCAAWCDVCTNYRPGFDELAAQHPDKLFVWIDI 60

Query: 61  EDQADLVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQREAAS 120
           ED+ADL+GD D++NFPTLLI+RG  V F+G   PD R+A R+L +   KS AEL+ +  S
Sbjct: 61  EDRADLIGDFDVENFPTLLIQRGDDVMFYGTTMPDHRIAHRLLTSHEGKSAAELKAQTQS 120

Query: 121 SAERSTWQEDCSLLDKLA 138
           SAE   WQE  +L   LA
Sbjct: 121 SAEYREWQEGRNLRQALA 138


>ref|ZP_04576568.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gb|EEO27530.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 145

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 89/133 (66%)

Query: 1   MSYQKLDQTNRRPLAEALRNDTWVVACLCANWCGSCREYEAAFQAWATRYPQHHFVWIDI 60
           M + +L + +   L   L  ++W+VAC CA+WCG+CR +   F+A A +Y    F+WIDI
Sbjct: 1   MPFIQLKEPDYPLLDATLSENSWIVACFCAHWCGACRGWRPTFEALAEKYADIVFLWIDI 60

Query: 61  EDQADLVGDLDIDNFPTLLIERGATVAFFGPMEPDTRLAERILLAQVDKSDAELQREAAS 120
           ED ADL+GDLD++NFP+LLI+ G  V FFG + PD  +AER+L +Q+D   +E++R A  
Sbjct: 61  EDHADLLGDLDVENFPSLLIQYGDIVNFFGCIHPDAGVAERLLKSQLDTEVSEMKRLAFL 120

Query: 121 SAERSTWQEDCSL 133
           + E   WQ+D +L
Sbjct: 121 NEEHVCWQKDVNL 133