BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1524.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775550.1| LysR family transcription regulator protein ... 549 e-154 ref|YP_004753082.1| transcriptional regulator [Collimonas fungiv... 399 e-109 ref|ZP_08274303.1| Transcriptional regulator, LysR family [Oxalo... 390 e-106 ref|YP_002913180.1| LysR family transcriptional regulator [Burkh... 264 2e-68 ref|YP_004362397.1| Transcriptional regulator, LysR family prote... 263 3e-68 >ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63642.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 274/303 (90%), Positives = 289/303 (95%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 AGQAYLERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPD 120 AGQAYLERV MILAEVDDAEALVS+ETKRPAGTLAIY NAGFGQSQLGEML+AY+ YP+ Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 VGLDVYLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPA 180 V LD+ LS+RSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVA+VILC SPAY+ R GAP Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 QPEDLSRH+CLNFSHEYLRHHWHVNT GV+DVPIVSKVVSNSGVLLRDLALAGMGIVLR Sbjct: 181 QPEDLSRHNCLNFSHEYLRHHWHVNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 Query: 241 PSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPHPETDP 300 PSYSLGDDLR G+LVQVLPGFDMGQV++SMVYPSRRLLSAKVRSFA+FISARFPHPE DP Sbjct: 241 PSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARFPHPENDP 300 Query: 301 WLT 303 WL+ Sbjct: 301 WLS 303 >ref|YP_004753082.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62259.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 304 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 194/302 (64%), Positives = 239/302 (79%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MDRLQSMRVFAKVVEQGSFV AA++LD+SNAV TR +ADLE HLG RLL+RSTRR++LTE Sbjct: 1 MDRLQSMRVFAKVVEQGSFVAAAQVLDMSNAVVTRLVADLENHLGIRLLHRSTRRMALTE 60 Query: 61 AGQAYLERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPD 120 GQAYLERV IL E+D+AEA S+ + +PAGTL IYS GFGQ+QL +L Y+ YPD Sbjct: 61 PGQAYLERVRQILDEIDEAEAAASVLSTKPAGTLHIYSQIGFGQTQLARLLPLYSKQYPD 120 Query: 121 VGLDVYLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPA 180 V LDV LSDR++DL+EEG D+G FS QKFDASM+ RQLG+A+V+LCASPAY+ G P Sbjct: 121 VRLDVTLSDRTVDLIEEGFDLGIFSVNQKFDASMVARQLGIAEVLLCASPAYIAEHGVPQ 180 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 PE+L++HSCLNFS E+LRHHW + G +PI SKV+SN+ LLR LAGMGI +R Sbjct: 181 TPEELAQHSCLNFSMEHLRHHWTFQSAEGASIIPITSKVMSNNTDLLRQCLLAGMGIAMR 240 Query: 241 PSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPHPETDP 300 SY+LGDD+ G++V+VLP + +V + +VYPSRRLLSAKVRSF DF+ A+FPHP+ DP Sbjct: 241 TSYTLGDDMVAGRVVRVLPDHQINKVAVRLVYPSRRLLSAKVRSFVDFMMAQFPHPDCDP 300 Query: 301 WL 302 WL Sbjct: 301 WL 302 >ref|ZP_08274303.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32226.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 189/301 (62%), Positives = 233/301 (77%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MDRLQSMRVFAKVVEQGSF A LD+SNAV TR +ADLE HLG RLLNR+TRRLSLTE Sbjct: 1 MDRLQSMRVFAKVVEQGSFAGAGLALDMSNAVVTRHVADLEKHLGARLLNRTTRRLSLTE 60 Query: 61 AGQAYLERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPD 120 G YLER IL ++DDA+A+ S ++ +PAGTL IYS+ GFGQ QL ++L YA ++P+ Sbjct: 61 TGLIYLERTKQILQDIDDADAMASSQSNKPAGTLRIYSHLGFGQLQLAQLLPRYALLFPE 120 Query: 121 VGLDVYLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPA 180 V LDV LSD ++DLVEEG DIG F +QKFDASMI RQ+G++ +ILCASP Y+ G P Sbjct: 121 VKLDVTLSDHTVDLVEEGFDIGMFIELQKFDASMIARQIGLSDIILCASPDYIRLHGTPL 180 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 +PED+S+H CLNF++E LRHHW + +DVPI SK+VSN G LLR ALAGMGIV+R Sbjct: 181 EPEDISQHVCLNFAYEQLRHHWSLIINKRSVDVPITSKLVSNDGNLLRQCALAGMGIVIR 240 Query: 241 PSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPHPETDP 300 S++LGDDL G+LV++LP +G + ++MVYPSRR LSAKVRSF DFIS FP P++DP Sbjct: 241 SSFTLGDDLSSGRLVRLLPQHHLGTLAVTMVYPSRRQLSAKVRSFIDFISTTFPEPQSDP 300 Query: 301 W 301 W Sbjct: 301 W 301 >ref|YP_002913180.1| LysR family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR30476.1| Transcriptional regulator, LysR family [Burkholderia glumae BGR1] Length = 352 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 147/299 (49%), Positives = 184/299 (61%), Gaps = 1/299 (0%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MD LQSMRVF KV + GSF RAA +DISNAVATR +ADLE LGTRLLNR+TR LSLTE Sbjct: 1 MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60 Query: 61 AGQAYLERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPD 120 +GQ YLER IL E++D E +V P GTL I + FG L +L Y YP Sbjct: 61 SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPK 120 Query: 121 VGLDVYLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPA 180 V D+ L DR +DLVEEG D+G + Q AS++ R+L + +CA+PAYLE+ G P Sbjct: 121 VVPDLTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEKHGVPT 180 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 PE L H L+ EY G + V + VV+N+ +LR AL GMGI + Sbjct: 181 HPEHLMEHPSLSLPSEYWGDERVFTGPDGEVRVRPTNVVVANNTEMLRQFALLGMGIAML 240 Query: 241 PSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPH-PET 298 PSY +G D GKLV++LP + + QV I++ YPSRR L AKVR+F D + F H PET Sbjct: 241 PSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTFIDHLVEHFSHSPET 299 >ref|YP_004362397.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] gb|AEA62441.1| Transcriptional regulator, LysR family protein [Burkholderia gladioli BSR3] Length = 352 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 146/299 (48%), Positives = 184/299 (61%), Gaps = 1/299 (0%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MD LQSMRVF KV + GSF RAA +DISNAVATR +ADLE LGTRLLNR+TR LSLTE Sbjct: 1 MDHLQSMRVFVKVADLGSFARAASAMDISNAVATRHVADLEGRLGTRLLNRTTRSLSLTE 60 Query: 61 AGQAYLERVHMILAEVDDAEALVSMETKRPAGTLAIYSNAGFGQSQLGEMLAAYAGIYPD 120 +GQ YLER IL E++D E +V P GTL I + FG L +L Y YP Sbjct: 61 SGQVYLERARQILDELEDVEQMVVARNHEPVGTLRIVAPVVFGLHNLAPVLQTYTQRYPK 120 Query: 121 VGLDVYLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVAKVILCASPAYLERAGAPA 180 V D+ L DR +DLVEEG D+G + Q AS++ R+L + +CA+PAYLE+ G P Sbjct: 121 VIPDLTLVDRQVDLVEEGFDVGVVIARQMRSASIVTRRLTTGCMTVCATPAYLEQHGVPT 180 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTEAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 PE L H L+ EY G + V + +V+N+ +LR AL GMGI + Sbjct: 181 HPEHLMEHPSLSLPSEYWGDERVFTGPDGEVRVRPTNVIVANNTEMLRQFALLGMGIAML 240 Query: 241 PSYSLGDDLRCGKLVQVLPGFDMGQVVISMVYPSRRLLSAKVRSFADFISARFPH-PET 298 PSY +G D GKLV++LP + + QV I++ YPSRR L AKVR+F D + F H PET Sbjct: 241 PSYLIGGDTARGKLVRLLPDYRLPQVEINVAYPSRRHLPAKVRTFIDHLVEHFSHSPET 299