BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1523.p         (212 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775549.1| hypothetical protein Hsero_2142 [Herbaspiril...    99   3e-19
ref|YP_004754285.1| hypothetical protein CFU_3638 [Collimonas fu...    58   1e-06

>ref|YP_003775549.1| hypothetical protein Hsero_2142 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63641.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 93

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/93 (80%), Positives = 83/93 (89%), Gaps = 1/93 (1%)

Query: 121 MNIKNIIVAASLLAAAGAAMAEAPYPPETPFHSTQTRADVKAELQRAQANHEIATRNEYP 180
           MNIKNI+VAASLLAAAGAAMAEAPYPPET FHST+TRADV+AEL RA+AN EIA RNEYP
Sbjct: 1   MNIKNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYP 60

Query: 181 IIRQAPSQLSRQDVANQVQQANSAAQS-LYSGA 212
           I+ QAPS LSRQDV NQ++QA+S AQ  LYSGA
Sbjct: 61  IVHQAPSTLSRQDVQNQLRQASSTAQQDLYSGA 93


>ref|YP_004754285.1| hypothetical protein CFU_3638 [Collimonas fungivorans Ter331]
 gb|AEK63462.1| hypothetical protein CFU_3638 [Collimonas fungivorans Ter331]
          Length = 143

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 65/92 (70%), Gaps = 4/92 (4%)

Query: 121 MNIKNIIVAASLLAAAGAAMAEAPYPPETPFHSTQTRADVKAELQRAQANHEIA-TRNEY 179
           MN+K +I   ++LAAAG+A+A+APYPPETPF ST++RADV+AEL +AQ +  +A  RN+Y
Sbjct: 54  MNMKQVIAGFAILAAAGSALADAPYPPETPFASTKSRADVQAELVQAQKDGSLAVARNQY 113

Query: 180 PIIRQAPSQLSRQDVANQVQQANSAAQSLYSG 211
           P++       +R +V   V Q N A  S+Y+G
Sbjct: 114 PVVAAVGQPETRAEV---VSQLNKAEPSVYNG 142