BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1512.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum ... 432 e-119 ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter3... 379 e-103 ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marse... 379 e-103 ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] >gi|... 375 e-102 ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium I... 374 e-102 >ref|YP_003775541.1| tRNA nucleotidyltransferase [Herbaspirillum seropedicae SmR1] emb|CAM32637.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae] gb|ADJ63633.1| tRNA nucleotidyltransferase (ribonuclease PH) protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 228/242 (94%), Positives = 233/242 (96%) Query: 1 MTASHRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 MTASHRPSGRS QLR+VRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ Sbjct: 1 MTASHRPSGRSPEQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180 DVLQADGGTRTAAITGAMVAAYDAF LKS+GLIE IPVK FVAAISVGV++GVPVLDLD Sbjct: 121 DVLQADGGTRTAAITGAMVAAYDAFAGLKSQGLIEAIPVKHFVAAISVGVFKGVPVLDLD 180 Query: 181 YLEDSDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 Y EDSDCDTDMNVVMTD GHFVEVQGTAEGAAFDRATLN LLDLAQQGIATLNGLQ+QAL Sbjct: 181 YPEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNALLDLAQQGIATLNGLQRQAL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >ref|YP_004753102.1| ribonuclease PH [Collimonas fungivorans Ter331] gb|AEK62279.1| Ribonuclease PH [Collimonas fungivorans Ter331] Length = 244 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 198/242 (81%), Positives = 213/242 (88%) Query: 1 MTASHRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ RPSGR+ LR VRLTR YTKHAEGSVLVEFGDT+V+CTAS+EEKVPGFLKGKGQ Sbjct: 1 MSTITRPSGRAADALRTVRLTRNYTKHAEGSVLVEFGDTKVICTASLEEKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRST+TRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTNTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180 DV+QADGGTRTA+ITGAMVAAYDAF L I IP+K FVAAISVGVYQG PVLDLD Sbjct: 121 DVIQADGGTRTASITGAMVAAYDAFARLLESKAIAAIPLKHFVAAISVGVYQGTPVLDLD 180 Query: 181 YLEDSDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 Y+EDS CDTDMNVVMTD GHF+EVQGTAEG AFDR TLN+LLDLAQ GI L LQKQAL Sbjct: 181 YVEDSGCDTDMNVVMTDTGHFIEVQGTAEGVAFDRPTLNSLLDLAQGGIGELIQLQKQAL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >ref|YP_001353022.1| ribonuclease PH [Janthinobacterium sp. Marseille] gb|ABR88326.1| ribonuclease PH [Janthinobacterium sp. Marseille] Length = 244 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 191/242 (78%), Positives = 216/242 (89%) Query: 1 MTASHRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ +RPSGR+ LR ++LTR YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ Sbjct: 1 MSYENRPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180 DV+QADGGTRTAAITG MVAAYDAF+ L ++ +I IP+K FVAAISVGVY+G PVLDLD Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180 Query: 181 YLEDSDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 Y EDSDCDTDMN+VMTD GHF+EVQGTAEGAAFDRAT++ LLDLAQ GI L LQKQAL Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQAL 240 Query: 241 GL 242 + Sbjct: 241 AI 242 >ref|YP_001100386.1| RNase PH [Herminiimonas arsenicoxydans] emb|CAL62263.1| Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase) [Herminiimonas arsenicoxydans] Length = 244 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 188/242 (77%), Positives = 214/242 (88%) Query: 1 MTASHRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ +RPSGR+ LR ++ R YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ Sbjct: 1 MSYENRPSGRAADALRAIKFIRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC Sbjct: 61 GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180 DV+QADGGTRTAAITG MVAAYDAF+ L ++ +I IP+K FVAAISVGVY+G PVLDLD Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180 Query: 181 YLEDSDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 Y EDSDCDTDMN+VMTD GHF+EVQGTAEGAAFDRAT++ LLDLAQ GI L +QKQAL Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDRLLDLAQDGIRDLIVMQKQAL 240 Query: 241 GL 242 + Sbjct: 241 AI 242 >ref|ZP_08272970.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] gb|EGF33592.1| Ribonuclease PH [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 374 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 191/242 (78%), Positives = 212/242 (87%) Query: 1 MTASHRPSGRSVSQLRDVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60 M+ RPSGR+ LR VRLTR YTKHAEGSVL+EFGDT+V+CTASIE+KVPGFLKGKGQ Sbjct: 1 MSVQLRPSGRTADALRPVRLTRHYTKHAEGSVLIEFGDTKVICTASIEDKVPGFLKGKGQ 60 Query: 61 GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120 GW+TAEYGMLPRSTHTRM REAAKGKQSGRTQEIQRLIGR+LRAAFDL AFGERTL LDC Sbjct: 61 GWMTAEYGMLPRSTHTRMAREAAKGKQSGRTQEIQRLIGRSLRAAFDLSAFGERTLHLDC 120 Query: 121 DVLQADGGTRTAAITGAMVAAYDAFNVLKSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180 DV+QADGGTRTA+ITGAMVAA+DAF+ L G++ +P+K FVAAISVGV+QG PVLDLD Sbjct: 121 DVIQADGGTRTASITGAMVAAHDAFSKLVDTGVLSAMPLKHFVAAISVGVFQGTPVLDLD 180 Query: 181 YLEDSDCDTDMNVVMTDGGHFVEVQGTAEGAAFDRATLNNLLDLAQQGIATLNGLQKQAL 240 Y EDS CDTDMNVVMTD GHF+EVQGTAEGAAFDRAT+N LLDLA GI L LQ++ L Sbjct: 181 YDEDSTCDTDMNVVMTDAGHFIEVQGTAEGAAFDRATMNQLLDLADGGIRDLIALQRREL 240 Query: 241 GL 242 GL Sbjct: 241 GL 242