BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1508.p         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775537.1| DNA-directed RNA polymerase subunit omega [H...   115   2e-24
ref|YP_001353017.1| DNA-directed RNA polymerase subunit omega [J...   114   3e-24
ref|YP_001100391.1| DNA-directed RNA polymerase subunit omega [H...   114   6e-24
ref|YP_004752965.1| DNA-directed RNA polymerase subunit omega [C...   112   2e-23
ref|ZP_08272965.1| DNA-directed RNA polymerase omega subunit [Ox...   110   6e-23

>ref|YP_003775537.1| DNA-directed RNA polymerase subunit omega [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ63629.1| DNA-directed RNA polymerase omega subunit protein [Herbaspirillum
          seropedicae SmR1]
          Length = 67

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/67 (97%), Positives = 67/67 (100%)

Query: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVEAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKV+AKDKPTVTALREIAAGKVG+E
Sbjct: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60

Query: 61 MLKKVPA 67
          MLKKVPA
Sbjct: 61 MLKKVPA 67


>ref|YP_001353017.1| DNA-directed RNA polymerase subunit omega [Janthinobacterium sp.
          Marseille]
 sp|A6SXM0|RPOZ_JANMA RecName: Full=DNA-directed RNA polymerase subunit omega;
          Short=RNAP omega subunit; AltName: Full=RNA polymerase
          omega subunit; AltName: Full=Transcriptase subunit
          omega
 gb|ABR91724.1| DNA-directed RNA polymerase (omega chain) [Janthinobacterium sp.
          Marseille]
          Length = 67

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/67 (94%), Positives = 65/67 (97%)

Query: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVEAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKV+AKDKPTV ALREIAAG VGIE
Sbjct: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67


>ref|YP_001100391.1| DNA-directed RNA polymerase subunit omega [Herminiimonas
          arsenicoxydans]
 sp|A4G6Y1|RPOZ_HERAR RecName: Full=DNA-directed RNA polymerase subunit omega;
          Short=RNAP omega subunit; AltName: Full=RNA polymerase
          omega subunit; AltName: Full=Transcriptase subunit
          omega
 emb|CAL62268.1| DNA-directed RNA polymerase omega chain (RNAP omega subunit)
          (Transcriptase omega chain) (RNA polymerase omega
          subunit) [Herminiimonas arsenicoxydans]
          Length = 67

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 62/67 (92%), Positives = 64/67 (95%)

Query: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVEAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTL ATYRARQLLQGHTPKV+AKDKPTV ALREIAAG VGIE
Sbjct: 1  MARITIEDCLKQIPNRFQLTLCATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67


>ref|YP_004752965.1| DNA-directed RNA polymerase subunit omega [Collimonas fungivorans
          Ter331]
 gb|AEK62142.1| DNA-directed RNA polymerase omega subunit [Collimonas fungivorans
          Ter331]
          Length = 67

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVEAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHT K++AKDKPTV ALREIAAGK+GIE
Sbjct: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTAKIDAKDKPTVVALREIAAGKIGIE 60

Query: 61 MLKKVPA 67
          MLKKVP 
Sbjct: 61 MLKKVPG 67


>ref|ZP_08272965.1| DNA-directed RNA polymerase omega subunit [Oxalobacteraceae
          bacterium IMCC9480]
 gb|EGF33587.1| DNA-directed RNA polymerase omega subunit [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 67

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/66 (92%), Positives = 63/66 (95%)

Query: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVEAKDKPTVTALREIAAGKVGIE 60
          MARITIEDC K IPNRFQLTL+ATYRARQLLQGHTPKV+AKDKPTV ALREIAAGKVGIE
Sbjct: 1  MARITIEDCTKYIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVVALREIAAGKVGIE 60

Query: 61 MLKKVP 66
          MLKKVP
Sbjct: 61 MLKKVP 66