BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1506.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_553291.1| hypothetical protein Bxe_B2044 [Burkholderia xe... 475 e-132 ref|YP_002363835.1| hypothetical protein Msil_3587 [Methylocella... 474 e-132 ref|YP_001889547.1| hypothetical protein Bphyt_5840 [Burkholderi... 472 e-131 ref|ZP_06840843.1| Protein of unknown function DUF2252 [Burkhold... 472 e-131 ref|YP_004349402.1| hypothetical protein bgla_2g14440 [Burkholde... 457 e-126 >ref|YP_553291.1| hypothetical protein Bxe_B2044 [Burkholderia xenovorans LB400] gb|ABE33941.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 410 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 248/405 (61%), Positives = 303/405 (74%), Gaps = 6/405 (1%) Query: 1 MPKKLITRT--PRPSARQDILKTAQNLKMARSAHAYVRGSTLRFYNWLNETQASSLPEGP 58 M KK +TR P+P ARQ +L T +N +MARSAHAYVRG+T +FY WL+ + +LPEGP Sbjct: 1 MAKKNLTRNKLPKPDARQALLVTRRNARMARSAHAYVRGNTSKFYEWLDGIEGHALPEGP 60 Query: 59 AIWICGDCHIGNLGPVANAEGKIDIQIRDFDQTVIGNPSHDLIRLALSLAMAARSSDLPG 118 AIWICGDCH GNLGPVA+A+G+++IQIRD DQTVIGNP+HDLIRL LSLA AAR SDLPG Sbjct: 61 AIWICGDCHTGNLGPVADAQGRVEIQIRDLDQTVIGNPAHDLIRLGLSLATAARGSDLPG 120 Query: 119 VITAKMMEVLVEGYESAFRPGD---DLRLGKKPKSVRVALKTAHRRTWKELAHERTQGKT 175 V T MME L EGYE AF D+R +KP++VRV +K A RR+W+ LA ER + Sbjct: 121 VTTVSMMEALAEGYELAFDEAAGNADIR-AEKPEAVRVVMKEAVRRSWRHLAEERIEDLE 179 Query: 176 VHIPLGKRFWSASRQERKEITALVESAPARALLTALRHREDDAAIKMLDTAYWMKGCSSL 235 IPLG RFW ++ ER+EI +L E L T LR D+A +++LD AYW+KGCSSL Sbjct: 180 PSIPLGPRFWPLAKSERREIESLFEKGSLARLATVLRGVGDEADVEVLDAAYWVKGCSSL 239 Query: 236 GLLRFAVLLDVNEQASESSDLCLFDIKEAVTAAAPRYRDAGMPRDNAERVVTGARHLAPH 295 G LR+AVLLD++ A+E DLCL DIKEAV AAAPRY MPRDNAERVV GARHL+P Sbjct: 240 GRLRYAVLLDIDGAAAEGDDLCLMDIKEAVQAAAPRYAGVRMPRDNAERVVEGARHLSPS 299 Query: 296 LGSRMLATRLLERPVFVRELLPQDLKLEIDHVSQEEALRAARYLARVVGQAHARQMDEAT 355 LG RM A RL +R V +RELLPQD+KL I+ ++++EA RAAR+LA VVG+AHARQMD Sbjct: 300 LGERMRAARLADRAVVIRELLPQDMKLTIEQLTRDEATRAARFLAMVVGRAHARQMDSGE 359 Query: 356 CRAWYTELARQRSKTLEVPSWLWRSVVDLVANHERAYLEHCRRYA 400 +AW TEL R RSKTL+ P WLW+ +V+LV++H YLEHCRRYA Sbjct: 360 RKAWLTELRRNRSKTLDAPGWLWKGIVELVSSHAAGYLEHCRRYA 404 >ref|YP_002363835.1| hypothetical protein Msil_3587 [Methylocella silvestris BL2] gb|ACK52473.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 414 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 240/393 (61%), Positives = 292/393 (74%) Query: 8 RTPRPSARQDILKTAQNLKMARSAHAYVRGSTLRFYNWLNETQASSLPEGPAIWICGDCH 67 + P R L A+NLKMARSAHAYVRG+T++FY WL+ +LPEGPAIWICGDCH Sbjct: 7 QIPGVDERDPPLTVARNLKMARSAHAYVRGNTIQFYEWLDGLDVGALPEGPAIWICGDCH 66 Query: 68 IGNLGPVANAEGKIDIQIRDFDQTVIGNPSHDLIRLALSLAMAARSSDLPGVITAKMMEV 127 +GNLGPVA+A GKI+I+IRD DQTVIGNP+HDL+RL LSLA AAR SDLPGV TA+M+E Sbjct: 67 VGNLGPVADANGKIEIEIRDLDQTVIGNPAHDLVRLGLSLASAARGSDLPGVTTAQMLEQ 126 Query: 128 LVEGYESAFRPGDDLRLGKKPKSVRVALKTAHRRTWKELAHERTQGKTVHIPLGKRFWSA 187 ++EGY+ AF D P++V A+K A RR+WK LA ER IPLGKRFW Sbjct: 127 MIEGYQQAFDAPDGQLTADLPQTVHFAMKQAARRSWKHLARERIADADPIIPLGKRFWPI 186 Query: 188 SRQERKEITALVESAPARALLTALRHREDDAAIKMLDTAYWMKGCSSLGLLRFAVLLDVN 247 S E+++I LVE+AP R L T LR R+DDA +++LD AYWMKGCSSLGLLR+ LL V Sbjct: 187 SGAEKRDIVRLVEAAPVRRLATMLRSRDDDATVQLLDAAYWMKGCSSLGLLRYCALLGVG 246 Query: 248 EQASESSDLCLFDIKEAVTAAAPRYRDAGMPRDNAERVVTGARHLAPHLGSRMLATRLLE 307 + ++CL D+KEA AAAPR A MP D+ ERVV GAR L+P LG RM A LL+ Sbjct: 247 GPSFADMEMCLMDVKEAAKAAAPRSAHADMPLDDGERVVEGARRLSPFLGQRMRAAHLLD 306 Query: 308 RPVFVRELLPQDLKLEIDHVSQEEALRAARYLARVVGQAHARQMDEATCRAWYTELARQR 367 RP+F+RELLPQDLKLEI +S EA+RAAR+LA +VG+AHARQMDE T R W TEL++ R Sbjct: 307 RPIFIRELLPQDLKLEISAMSHGEAMRAARFLAAIVGKAHARQMDEGTRRGWRTELSKSR 366 Query: 368 SKTLEVPSWLWRSVVDLVANHERAYLEHCRRYA 400 S+TLE PSWLW SVVDL+ +HER YLEHCR ++ Sbjct: 367 SRTLEAPSWLWSSVVDLLVSHERGYLEHCRVHS 399 >ref|YP_001889547.1| hypothetical protein Bphyt_5840 [Burkholderia phytofirmans PsJN] gb|ACD20176.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN] Length = 413 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 240/399 (60%), Positives = 295/399 (73%), Gaps = 2/399 (0%) Query: 4 KLITRTPRPSARQDILKTAQNLKMARSAHAYVRGSTLRFYNWLNETQASSLPEGPAIWIC 63 KL + P+P ARQ +L T +N KMARSAHAYVRG+T +FY WL+ + +LPEGPAIWIC Sbjct: 10 KLSNKLPKPDARQALLTTRRNAKMARSAHAYVRGNTSKFYEWLDGIEGHALPEGPAIWIC 69 Query: 64 GDCHIGNLGPVANAEGKIDIQIRDFDQTVIGNPSHDLIRLALSLAMAARSSDLPGVITAK 123 GDCH GNLGPVA+A+G+++IQIRD DQTVIGNP+HDLIRL LSLA AAR SDLPGV T + Sbjct: 70 GDCHTGNLGPVADAQGRVEIQIRDLDQTVIGNPAHDLIRLGLSLATAARGSDLPGVTTVR 129 Query: 124 MMEVLVEGYESAFRPGDDLR--LGKKPKSVRVALKTAHRRTWKELAHERTQGKTVHIPLG 181 MME + +GYE AF + +KP++VRV ++ A RR+W+ LA ER + IPLG Sbjct: 130 MMEAIADGYERAFDEAAGIADIHAEKPEAVRVVMREAVRRSWRHLAEERIEDLEPTIPLG 189 Query: 182 KRFWSASRQERKEITALVESAPARALLTALRHREDDAAIKMLDTAYWMKGCSSLGLLRFA 241 RFW ++ ER+EI L E L T LR D+A +++LD AYW+KGCSSLG LR+A Sbjct: 190 PRFWPLAKSERREIETLFEKGSLARLATVLRGTGDEADVEVLDAAYWVKGCSSLGRLRYA 249 Query: 242 VLLDVNEQASESSDLCLFDIKEAVTAAAPRYRDAGMPRDNAERVVTGARHLAPHLGSRML 301 VLLD++ A E DLCL DIKEA AAAPRY MPRDNAERVV GARHL+P LG RM Sbjct: 250 VLLDIDGAAVEGDDLCLIDIKEAAQAAAPRYPGVRMPRDNAERVVEGARHLSPSLGERMR 309 Query: 302 ATRLLERPVFVRELLPQDLKLEIDHVSQEEALRAARYLARVVGQAHARQMDEATCRAWYT 361 A RL ER V +RELLPQD+KL I+ +++EA++ AR+LA VVG+AHARQMD A +AW T Sbjct: 310 AARLAERAVVIRELLPQDMKLTIEQFTRDEAMKVARFLAMVVGKAHARQMDSAERKAWLT 369 Query: 362 ELARQRSKTLEVPSWLWRSVVDLVANHERAYLEHCRRYA 400 EL R RSKTL+ P WLW +V+LV++H YLEHCRRYA Sbjct: 370 ELRRNRSKTLDAPGWLWTGIVELVSSHAAGYLEHCRRYA 408 >ref|ZP_06840843.1| Protein of unknown function DUF2252 [Burkholderia sp. Ch1-1] gb|EFG71563.1| Protein of unknown function DUF2252 [Burkholderia sp. Ch1-1] Length = 410 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 246/405 (60%), Positives = 302/405 (74%), Gaps = 6/405 (1%) Query: 1 MPKKLITRT--PRPSARQDILKTAQNLKMARSAHAYVRGSTLRFYNWLNETQASSLPEGP 58 M KK +TR P+P ARQ +L T +N +MARSAHAYVRG+T +FY WL + +LPEGP Sbjct: 1 MAKKNLTRNKLPKPDARQALLVTRRNARMARSAHAYVRGNTSKFYEWLEGIEGHALPEGP 60 Query: 59 AIWICGDCHIGNLGPVANAEGKIDIQIRDFDQTVIGNPSHDLIRLALSLAMAARSSDLPG 118 AIWICGDCH GNLGPVA+A+G+++IQIRD DQTVIGNP+HDLIRL LSLA AAR SDLPG Sbjct: 61 AIWICGDCHTGNLGPVADAQGRVEIQIRDLDQTVIGNPAHDLIRLGLSLATAARGSDLPG 120 Query: 119 VITAKMMEVLVEGYESAFRPGD---DLRLGKKPKSVRVALKTAHRRTWKELAHERTQGKT 175 V T MME L +GYE AF D+R +KP++VRV +K A RR+W+ LA ER + Sbjct: 121 VTTVSMMEALADGYELAFDEAAGNADIR-AEKPEAVRVVMKEAVRRSWRHLAEERIEDLE 179 Query: 176 VHIPLGKRFWSASRQERKEITALVESAPARALLTALRHREDDAAIKMLDTAYWMKGCSSL 235 IPLG RFW ++ ER+EI +L E L T LR D+A +++LD AYW+KGCSSL Sbjct: 180 PSIPLGPRFWPLAKSERREIESLFEKGSLARLATVLRGVGDEADVEVLDAAYWVKGCSSL 239 Query: 236 GLLRFAVLLDVNEQASESSDLCLFDIKEAVTAAAPRYRDAGMPRDNAERVVTGARHLAPH 295 G LR+AVLLD++ +E DLCL DIKEAV AAAPRY MPRDNAERVV GARHL+P Sbjct: 240 GRLRYAVLLDIDGATAEGDDLCLMDIKEAVQAAAPRYAGVRMPRDNAERVVEGARHLSPS 299 Query: 296 LGSRMLATRLLERPVFVRELLPQDLKLEIDHVSQEEALRAARYLARVVGQAHARQMDEAT 355 LG RM A RL +R V +RELLPQD+KL I+ ++++EA +AAR+LA VVG+AHARQMD A Sbjct: 300 LGERMRAARLADRAVVIRELLPQDMKLTIEQLTRDEATKAARFLAMVVGRAHARQMDSAE 359 Query: 356 CRAWYTELARQRSKTLEVPSWLWRSVVDLVANHERAYLEHCRRYA 400 +AW TEL R RSKTL+ P WLW+ +V+LV++H YLEHCRRYA Sbjct: 360 RKAWLTELRRNRSKTLDAPGWLWKGIVELVSSHAAGYLEHCRRYA 404 >ref|YP_004349402.1| hypothetical protein bgla_2g14440 [Burkholderia gladioli BSR3] gb|AEA63890.1| hypothetical protein bgla_2g14440 [Burkholderia gladioli BSR3] Length = 408 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 242/401 (60%), Positives = 282/401 (70%), Gaps = 1/401 (0%) Query: 1 MPKKLITRTPRPSARQDILKTAQNLKMARSAHAYVRGSTLRFYNWLNETQASSLPEGPAI 60 M K + RP R L +N KMARS HAYVRG+T R+Y WL + + +LPEGPAI Sbjct: 1 MKKPPVVTYVRPRQRAQTLAIRRNRKMARSVHAYVRGNTARYYEWLADAKVGTLPEGPAI 60 Query: 61 WICGDCHIGNLGPVANAEGKIDIQIRDFDQTVIGNPSHDLIRLALSLAMAARSSDLPGVI 120 WICGDCH GNLGPVAN G+I+IQIRD DQTVIGNP HDLIRL+LSLA AARSSDLPG++ Sbjct: 61 WICGDCHTGNLGPVANDAGEIEIQIRDLDQTVIGNPVHDLIRLSLSLATAARSSDLPGIV 120 Query: 121 TAKMMEVLVEGYESAFRPGDDLRLG-KKPKSVRVALKTAHRRTWKELAHERTQGKTVHIP 179 TA+++E + EGY A G R KP VR+ ++TA RTWK LA ER G +P Sbjct: 121 TARIIEQVHEGYMHALAAGKRKRAAIPKPDVVRIVMRTALERTWKHLARERLMGVKPVLP 180 Query: 180 LGKRFWSASRQERKEITALVESAPARALLTALRHREDDAAIKMLDTAYWMKGCSSLGLLR 239 LGKRFW SR E I ALV++ L LR +++LD AYW+KGCSSLG LR Sbjct: 181 LGKRFWPLSRAESNGIAALVDTPAIAELAVGLRGNRPAEHVELLDAAYWVKGCSSLGRLR 240 Query: 240 FAVLLDVNEQASESSDLCLFDIKEAVTAAAPRYRDAGMPRDNAERVVTGARHLAPHLGSR 299 +AVLLDV+ ASE DLCL DIKE TA APRYRD+ MPRDN +RVV GARHL+P+LG+R Sbjct: 241 YAVLLDVDGAASEGDDLCLVDIKEGTTALAPRYRDSEMPRDNGKRVVEGARHLSPYLGNR 300 Query: 300 MLATRLLERPVFVRELLPQDLKLEIDHVSQEEALRAARYLARVVGQAHARQMDEATCRAW 359 M A L ER V VRELLP DLKLEI V + EALR ARYLA VVG AHARQMD +T W Sbjct: 301 MCAATLSERSVIVRELLPADLKLEIGSVDEAEALRIARYLAHVVGLAHARQMDTSTRARW 360 Query: 360 YTELARQRSKTLEVPSWLWRSVVDLVANHERAYLEHCRRYA 400 EL R RSKT++ P WLWRSV++L+ NHE YLEHCRR A Sbjct: 361 LAELKRVRSKTIDAPFWLWRSVIELMGNHEVGYLEHCRRVA 401