BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1505.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775535.1| LysR family transcription regulator protein ... 589 e-166 ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemo... 277 2e-72 ref|YP_002028354.1| LysR family transcriptional regulator [Steno... 276 2e-72 ref|YP_002947107.1| LysR family transcriptional regulator [Vario... 276 4e-72 ref|ZP_05639232.1| LysR family transcriptional regulator [Pseudo... 275 6e-72 >ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 291/314 (92%), Positives = 307/314 (97%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 MLDLNDIWLFVHVVRAGSFAAAGR+LSMPPNTISRRLQ+LEAAMGVRLLQRSTRQLNMTA Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AGREFFERCAPGLEDIEHASASLT+SQGEP+GSLRVAAPVDFFDNFSIEWMHEFMHLYPK Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHMALIASPRYLERAGTPQA 180 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSH+ALIASPRYLER GTPQ+ Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQGTPQS 180 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIALLP 240 L DL HACLATSQAPQHTVWKLEGPHGPE+V+V PRLC+NTAQGQLRAARAGLGIALLP Sbjct: 181 LTDLTAHACLATSQAPQHTVWKLEGPHGPESVKVTPRLCVNTAQGQLRAARAGLGIALLP 240 Query: 241 TMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG 300 TMLASEDLRNG+L+NILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG Sbjct: 241 TMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERGIADKG 300 Query: 301 AQACQEHLKREAAV 314 AQAC++HL+ E+ + Sbjct: 301 AQACEKHLEGESGL 314 >ref|ZP_08406161.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI76714.1| LysR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 309 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 148/294 (50%), Positives = 196/294 (66%), Gaps = 2/294 (0%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 MLDLND+ +FV VVR GSFA A R+L +PPNT+SRR+Q LE +G RL+QRSTR+L++T Sbjct: 1 MLDLNDVAVFVQVVRYGSFAEAARQLGIPPNTLSRRVQQLETQLGTRLMQRSTRKLSLTT 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AG+EF +RCA +E + A SL PSG +RVAAP DFFD F +EW+ F+ +P+ Sbjct: 61 AGQEFHDRCAQAVEGLVDAGQSLLSRNETPSGLVRVAAPADFFDFFPMEWLASFLAEHPR 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHM-ALIASPRYLERAGTPQ 179 V+L+FVL+D RADLIA+ ID+A RGGVL DS L AR+++ + + L+ASP Y+ G P Sbjct: 121 VRLDFVLSDARADLIADRIDVAIRGGVLEDSGLFARRVLDAGLDGLVASPAYIAARGMPA 180 Query: 180 ALADLVGHACLATSQAPQHTVWKLEGPHGPE-NVRVVPRLCINTAQGQLRAARAGLGIAL 238 +L DL H CL + W L GP G + V+V RL NT Q +AA AG+GIAL Sbjct: 181 SLQDLADHDCLVFAHPAGQATWGLSGPDGKDATVQVAGRLSGNTVQVLRKAALAGMGIAL 240 Query: 239 LPTMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 LP+ + +LR G L+ +LP + R G + VY RR LPSAVSA I+ A+K Sbjct: 241 LPSTMTRRELRAGLLVPVLPQFHRKGHGVHLVYASRRHLPSAVSAFIDLVANKF 294 >ref|YP_002028354.1| LysR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gb|ACF51671.1| transcriptional regulator, LysR family [Stenotrophomonas maltophilia R551-3] Length = 297 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 141/295 (47%), Positives = 189/295 (64%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 M+DLND+ LFV V +AGSFA A R++ MP NT SRR+Q LE +GVRLL RSTR+L +T Sbjct: 1 MIDLNDVALFVQVAKAGSFAEAARRIGMPSNTASRRIQQLEEQLGVRLLHRSTRKLTLTD 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AG + R +E + A+ L++ P G +RVAAPVDFF+ F +EW+ F+ +P+ Sbjct: 61 AGEGLYARSVEQIEALADATLELSEGSEVPVGKVRVAAPVDFFNWFQLEWVQSFLQAHPR 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHMALIASPRYLERAGTPQA 180 V+LEFVLND RADL+A+GID+A RGG + +L+ARK+ + L+ASP YLE G P A Sbjct: 121 VRLEFVLNDARADLVADGIDVAIRGGAVTGPTLIARKVGNNRAVLVASPAYLESRGAPSA 180 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGPENVRVVPRLCINTAQGQLRAARAGLGIALLP 240 L DL H C+A T W+L GP GP V V R N+A +A AG+GIALL Sbjct: 181 LEDLSTHDCIAVPSGSGRTQWRLMGPDGPAEVEVRGRFSANSALALTKACVAGMGIALLT 240 Query: 241 TMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLERG 295 + ++ LR G L+ +LPDY+ D + + VY RRQLP A SA ++F L +G Sbjct: 241 EAMVAQPLREGKLVQVLPDYRIDGLELFVVYQSRRQLPRAASAFVDFAMTHLLQG 295 >ref|YP_002947107.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS21841.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 310 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 150/294 (51%), Positives = 194/294 (65%), Gaps = 2/294 (0%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTA 60 MLDLNDI +FV VVR GSFA A R+L +PPNT+SRR+Q LEA +G RL+QRSTR+L +T+ Sbjct: 1 MLDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTS 60 Query: 61 AGREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 AG+ F ERCA ++ + A +L +PSG +RVAA DFFD F +EW+ +F+ +P Sbjct: 61 AGQAFHERCAGPVDGLVEAGQALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPL 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHM-ALIASPRYLERAGTPQ 179 V+++FVL+D RADLIAE ID+AFRGG LPDS V RKL+ + ++ASP Y+ G P Sbjct: 121 VRVDFVLSDARADLIAEQIDIAFRGGALPDSGYVGRKLLGARTDGMVASPAYIAARGAPA 180 Query: 180 ALADLVGHACLATSQAPQHTVWKLEGPHGP-ENVRVVPRLCINTAQGQLRAARAGLGIAL 238 L DL H C+ + T+W+L GP G E V+V R NTAQ +AA AGLGIAL Sbjct: 181 TLQDLANHDCVTSPHPSGRTLWRLAGPGGTEEEVQVAGRFSGNTAQALRKAALAGLGIAL 240 Query: 239 LPTMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 LP +A DL G L+ +LP YQR G +Y R+ LP AVSA I +KL Sbjct: 241 LPPTMARLDLEAGRLVPVLPQYQRTGQGLSVLYPSRKHLPLAVSAFIAMVMEKL 294 >ref|ZP_05639232.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gb|EGH90960.1| LysR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 303 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 148/293 (50%), Positives = 194/293 (66%), Gaps = 2/293 (0%) Query: 2 LDLNDIWLFVHVVRAGSFAAAGRKLSMPPNTISRRLQALEAAMGVRLLQRSTRQLNMTAA 61 LDLND+ LFV VVR+GSFA A R L MP NT+SRR+Q LE +G RLLQRSTR+L +T A Sbjct: 3 LDLNDVALFVQVVRSGSFAQAARHLGMPSNTVSRRVQQLEIQLGTRLLQRSTRKLVLTQA 62 Query: 62 GREFFERCAPGLEDIEHASASLTQSQGEPSGSLRVAAPVDFFDNFSIEWMHEFMHLYPKV 121 G +F ERC ++ + A+ L + EP G LR+AA DFFD FS+EW+ +F+ YP+V Sbjct: 63 GEDFHERCVGAVDGLMDAAEQLVSHREEPGGRLRIAAMADFFDFFSMEWVADFLAEYPRV 122 Query: 122 QLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQS-HMALIASPRYLERAGTPQA 180 QLEFVL+D RADLIA+ +D+AFRGG L DS V R+L++ H +++ASP Y+ G P + Sbjct: 123 QLEFVLSDERADLIADRLDIAFRGGPLQDSGYVGRQLIEEGHDSMVASPAYIAAHGMPDS 182 Query: 181 LADLVGHACLATSQAPQHTVWKLEGPHGP-ENVRVVPRLCINTAQGQLRAARAGLGIALL 239 L L GH C++T+ TVW+L GP V++ R NTAQ +A AGLGIALL Sbjct: 183 LQSLHGHYCVSTAHPGGSTVWRLLGPDAKMHEVQMASRFNANTAQALRKATLAGLGIALL 242 Query: 240 PTMLASEDLRNGSLINILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 P L DLR+G L+ +L YQR + G + +Y R+ LP AVSA I +KL Sbjct: 243 PATLIRSDLRDGRLVPVLTQYQRTSHGLHVLYPSRQHLPPAVSAFIALVMEKL 295