BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1502.p (432 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775532.1| transcription elongation/transcript cleavage... 341 2e-91 ref|YP_004752236.1| transcription elongation factor [Collimonas ... 306 5e-81 ref|ZP_08272963.1| Transcription elongation factor GreB [Oxaloba... 290 4e-76 ref|YP_001353015.1| transcription elongation factor GreB [Janthi... 283 3e-74 ref|ZP_04577201.1| transcription elongation factor and transcrip... 280 3e-73 >ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 175/185 (94%), Positives = 182/185 (98%) Query: 247 MNKAFVKESDGADDDDEIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW 306 MNKAFVKESDG DDD++IALP++PAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW Sbjct: 1 MNKAFVKESDGDDDDEDIALPSVPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW 60 Query: 307 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE 366 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE Sbjct: 61 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE 120 Query: 367 NQRGEEHTVTIVGIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILEVT 426 NQRGE HTVTIVGIDELDPLKG ISWISPVARALTKAREGDEVVLQTP+G+EQLTILEV+ Sbjct: 121 NQRGEAHTVTIVGIDELDPLKGRISWISPVARALTKAREGDEVVLQTPAGLEQLTILEVS 180 Query: 427 YPAPQ 431 YPAPQ Sbjct: 181 YPAPQ 185 >ref|YP_004752236.1| transcription elongation factor [Collimonas fungivorans Ter331] gb|AEK61413.1| Transcription elongation factor [Collimonas fungivorans Ter331] Length = 188 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 148/187 (79%), Positives = 167/187 (89%) Query: 245 SSMNKAFVKESDGADDDDEIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVV 304 S+MNKAFVKES+G DDD E LPAIP G+KNYMTP+G+QR+KDELL LID +RPEVVR+V Sbjct: 2 SAMNKAFVKESEGDDDDLEFGLPAIPPGTKNYMTPEGYQRMKDELLRLIDVDRPEVVRIV 61 Query: 305 SWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVT 364 SWAASNGDRSENGDY+YGK+RLREIDRRIRFLTKRLD AEVVDPSVHHG DQ+FFGATV+ Sbjct: 62 SWAASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDLAEVVDPSVHHGRDQVFFGATVS 121 Query: 365 YENQRGEEHTVTIVGIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILE 424 Y+N GEEHTVTIVGIDELDPL G ISWISPVARALTKA EG+ V L TP+G+++L IL Sbjct: 122 YQNHAGEEHTVTIVGIDELDPLHGKISWISPVARALTKAHEGESVTLMTPAGIDELEILA 181 Query: 425 VTYPAPQ 431 V+YP PQ Sbjct: 182 VSYPEPQ 188 >ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 143/184 (77%), Positives = 165/184 (89%) Query: 247 MNKAFVKESDGADDDDEIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW 306 MNKAFVKESD DDDDE+ALP IPAG++NYMTP G QR+++ELLHLID +RPEVV +V W Sbjct: 1 MNKAFVKESDNDDDDDELALPEIPAGTRNYMTPAGFQRMREELLHLIDVDRPEVVHIVHW 60 Query: 307 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE 366 AASNGDRSENGDY+YGK+RLREIDRRIRFLTKRLD AEVVDP++HHG++Q+FFGATV YE Sbjct: 61 AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDVAEVVDPTIHHGNEQVFFGATVRYE 120 Query: 367 NQRGEEHTVTIVGIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILEVT 426 N GE+H +TIVGIDELDPL G ISWISPVARA+TK+R GD + L+TPSGVE+L ILEVT Sbjct: 121 NSAGEQHVITIVGIDELDPLHGKISWISPVARAITKSRVGDTITLKTPSGVEELQILEVT 180 Query: 427 YPAP 430 YPAP Sbjct: 181 YPAP 184 >ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp. Marseille] Length = 183 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 139/173 (80%), Positives = 155/173 (89%) Query: 259 DDDDEIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGD 318 D+D + + P IPAG+KNYMTPQGH R+K ELL LID ERPEVV++VSWAASNGDRSENGD Sbjct: 11 DEDGDNSAPPIPAGAKNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGD 70 Query: 319 YLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEEHTVTIV 378 Y+YGK+RLR+ID RIRFLTKRLD AEVVDPS+HHGSDQIFFGATV YE Q G+EHTVTI+ Sbjct: 71 YIYGKRRLRQIDGRIRFLTKRLDLAEVVDPSIHHGSDQIFFGATVRYETQAGDEHTVTIL 130 Query: 379 GIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILEVTYPAPQ 431 GIDELDPL G ISWISPVARALTKAREGD VVL+TP G+E+L ILEVTYPAPQ Sbjct: 131 GIDELDPLNGKISWISPVARALTKAREGDTVVLKTPGGLEELLILEVTYPAPQ 183 >ref|ZP_04577201.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] gb|EEO28163.1| transcription elongation factor and transcript cleavage [Oxalobacter formigenes HOxBLS] Length = 184 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 135/185 (72%), Positives = 159/185 (85%), Gaps = 1/185 (0%) Query: 247 MNKAFVKESDGADDDDEIALPAIPAGSKNYMTPQGHQRIKDELLHLIDEERPEVVRVVSW 306 MNKAFVKE+D DD+ E A+PA+PAG KNY+TP G +++KDELL LID ERP+VV+ VSW Sbjct: 1 MNKAFVKETDN-DDELEPAIPALPAGFKNYITPAGLKKLKDELLELIDTERPQVVQTVSW 59 Query: 307 AASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYE 366 AASNGDRSENGDY+YGK+RLREIDRRIRFL KR++ AE DPSVH+G+DQIFFGATVTYE Sbjct: 60 AASNGDRSENGDYIYGKRRLREIDRRIRFLIKRIEAAEEFDPSVHYGNDQIFFGATVTYE 119 Query: 367 NQRGEEHTVTIVGIDELDPLKGLISWISPVARALTKAREGDEVVLQTPSGVEQLTILEVT 426 Q GEE+TVTIVGIDE DPL+G ISWISP+AR L KA EGD V L TP+G+E+L ILEV+ Sbjct: 120 RQNGEENTVTIVGIDEFDPLQGKISWISPMARTLIKAHEGDTVTLHTPAGIEELVILEVS 179 Query: 427 YPAPQ 431 YP P+ Sbjct: 180 YPQPR 184