BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1500.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775530.1| transmembrane protein [Herbaspirillum serope... 178 3e-43 ref|YP_285680.1| hypothetical protein Daro_2475 [Dechloromonas a... 102 5e-20 ref|YP_001899510.1| hypothetical protein Rpic_1943 [Ralstonia pi... 91 1e-16 ref|ZP_07677310.1| conserved hypothetical protein [Ralstonia sp.... 90 2e-16 ref|YP_002981571.1| hypothetical protein Rpic12D_1615 [Ralstonia... 87 2e-15 >ref|YP_003775530.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63622.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 143/194 (73%), Positives = 166/194 (85%), Gaps = 4/194 (2%) Query: 1 MTDPTLPPRRPPRWRRRLLAPLIYTAALLLMLEEWLWDATQAVLARIPEWPWLVQLQRWV 60 M+ P+ PRRP WRRRLLAPLIYTAALLLMLEEWLWDA+QAVLARIP WP LV+LQRWV Sbjct: 1 MSSPSPAPRRPRYWRRRLLAPLIYTAALLLMLEEWLWDASQAVLARIPAWPLLVRLQRWV 60 Query: 61 ERLSPYAALLIFLAPTLLLLPVKILALMSIAHGHPTLGVIIVLTAKVLGTALVARIYALT 120 ERLSPYAALLIFLAPTLLLLPVKILAL+SI HGHPTLG+ IVL AKVLGTALVARIYALT Sbjct: 61 ERLSPYAALLIFLAPTLLLLPVKILALLSITHGHPTLGLCIVLIAKVLGTALVARIYALT 120 Query: 121 RRSLLSLDWFQRYHTRLLDIKARLTAQLQATAGWQQVQRLLKAVKSAIGEFKRKLAARIV 180 RRSLLSL WFQRYH +L++IKARL AQL A+AGW+Q+QRL ++++ + + +LAA Sbjct: 121 RRSLLSLAWFQRYHDKLMEIKARLLAQLHASAGWRQLQRLRQSLREGMLRLRLRLAA--- 177 Query: 181 TRPGAPSSRLLRLL 194 P +P +R+LRL+ Sbjct: 178 -TPSSPLARILRLV 190 >ref|YP_285680.1| hypothetical protein Daro_2475 [Dechloromonas aromatica RCB] gb|AAZ47210.1| hypothetical protein Daro_2475 [Dechloromonas aromatica RCB] Length = 190 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 97/163 (59%) Query: 13 RWRRRLLAPLIYTAALLLMLEEWLWDATQAVLARIPEWPWLVQLQRWVERLSPYAALLIF 72 + +R L P I AA+LL EWLW+ + V+A+I +WP L ++ W+ R Y AL F Sbjct: 4 KLKRVLTPPFIILAAVLLWFWEWLWEPLERVMAKIGQWPVLRLVEAWIGRAPRYVALACF 63 Query: 73 LAPTLLLLPVKILALMSIAHGHPTLGVIIVLTAKVLGTALVARIYALTRRSLLSLDWFQR 132 L P +LLP K++ L +AHG P LGV LTAKV+GTALVARI+ALT+R L+ + WF R Sbjct: 64 LIPGAVLLPFKLIGLYFLAHGAPLLGVGTFLTAKVVGTALVARIFALTKRQLMEIAWFAR 123 Query: 133 YHTRLLDIKARLTAQLQATAGWQQVQRLLKAVKSAIGEFKRKL 175 + ++ K + L + + + +L A++ + +R L Sbjct: 124 AYAGVVRFKTYVFDTLHQHPVYLRTRGMLLALRLRVQGIRRGL 166 >ref|YP_001899510.1| hypothetical protein Rpic_1943 [Ralstonia pickettii 12J] gb|ACD27078.1| putative transmembrane protein [Ralstonia pickettii 12J] Length = 181 Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 98/175 (56%), Gaps = 5/175 (2%) Query: 22 LIYTAALLLMLEEWLWDATQAVLARIPEWPWLVQLQRWVERLSPYAALLIFLAPTLLLLP 81 LI AAL+L+LEEW+W+ + V AR+ PW+ +R + +L P AL F P L LLP Sbjct: 6 LIVAAALILLLEEWIWNVMRQVTARLAAHPWVQAAERKLAQLEPIEALCAFALPMLALLP 65 Query: 82 VKILALMSIAHGHPTLGVIIVLTAKVLGTALVARIYALTRRSLLSLDWFQRYHTRLLDIK 141 K+ A+ +A GH G I+++ AK++ T L RIY+ R L ++ W+ R+ + L K Sbjct: 66 FKLAAVYVLARGHLIAGAIVLVAAKIVSTGLGVRIYSAVRPQLHTIAWYARWESAFLAWK 125 Query: 142 ARLTAQLQATAGWQQVQRLLKAVKSAIGEFKRKLAARIVTRPGAPSSRLLRLLRR 196 R+ A LQAT+ WQ Q V+ A+ +R + + R + R+LR RR Sbjct: 126 QRMLATLQATSTWQAFQ-----VRIAVWRARRHGTMQQIWRRLIAAVRVLRRHRR 175 >ref|ZP_07677310.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|EFP64352.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 186 Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 5/175 (2%) Query: 22 LIYTAALLLMLEEWLWDATQAVLARIPEWPWLVQLQRWVERLSPYAALLIFLAPTLLLLP 81 LI AAL L+LEEW+W A Q AR+ PW+ +R + L P AL F P L LLP Sbjct: 11 LIVVAALFLLLEEWIWKAMQRATARLATHPWVQAAERKLAELEPIEALCAFALPMLALLP 70 Query: 82 VKILALMSIAHGHPTLGVIIVLTAKVLGTALVARIYALTRRSLLSLDWFQRYHTRLLDIK 141 K+ A+ +A GH G ++++ AK++ T L RIY+ R L ++ W+ R+ + L K Sbjct: 71 FKLAAVYVLARGHLFAGTLVLVAAKIVSTGLGVRIYSAVRPQLHTIAWYTRWESAFLAWK 130 Query: 142 ARLTAQLQATAGWQQVQRLLKAVKSAIGEFKRKLAARIVTRPGAPSSRLLRLLRR 196 R+ A LQAT WQ +Q V+ A+ +R + V R + RLLR RR Sbjct: 131 QRMLAALQATPTWQALQ-----VRIAVWRARRHGTMQQVWRRLIAAVRLLRRHRR 180 >ref|YP_002981571.1| hypothetical protein Rpic12D_1615 [Ralstonia pickettii 12D] gb|ACS62899.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 186 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 78/137 (56%) Query: 22 LIYTAALLLMLEEWLWDATQAVLARIPEWPWLVQLQRWVERLSPYAALLIFLAPTLLLLP 81 LI AAL+L+LEEW+W A Q AR+ PW+ +R + +L P AL F P L LLP Sbjct: 11 LIVGAALILLLEEWIWKAMQRATARLAAHPWVGAAERKLAQLEPIEALCAFALPMLALLP 70 Query: 82 VKILALMSIAHGHPTLGVIIVLTAKVLGTALVARIYALTRRSLLSLDWFQRYHTRLLDIK 141 K+ A+ +A GH G +++ AK++ T L RIY+ R L ++ W+ R L K Sbjct: 71 FKLAAVYVLARGHVIAGTFVLVAAKIVSTGLGVRIYSAVRPQLHTIAWYARLEFAFLAWK 130 Query: 142 ARLTAQLQATAGWQQVQ 158 R+ A LQAT WQ V+ Sbjct: 131 KRMIAALQATPTWQAVR 147