BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1495.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775526.1| molybdenum transport regulator protein [Herb...   189   2e-46
ref|YP_002219328.1| putative ModE family transcriptional regulat...   122   2e-26
ref|YP_004784615.1| putative ModE family transcriptional regulat...   122   2e-26
ref|YP_004752220.1| putative transcriptional regulator [Collimon...   117   6e-25
ref|ZP_05293259.1| hypothetical protein ACA_0746 [Acidithiobacil...   109   1e-22

>ref|YP_003775526.1| molybdenum transport regulator protein [Herbaspirillum seropedicae
           SmR1]
 gb|ABS11245.1| ModE2 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63618.1| molybdenum transport regulator protein [Herbaspirillum seropedicae
           SmR1]
          Length = 123

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/122 (89%), Positives = 112/122 (91%)

Query: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIARTGSISGAAREMEMSYRRAWLLVEEMNRC 60
           MNDSKTLRVRVMQGETIAFGPGKADLLQAI RTGSISGAAREMEMSYRRAWLLVEEMNRC
Sbjct: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIGRTGSISGAAREMEMSYRRAWLLVEEMNRC 60

Query: 61  FASPLVATATGGARGGGAAVTELGQEVLARYRRMQKKAAASIATDLRHLQGLMSAVQPEG 120
           FASPLV TATGG+RGGGAAVT LGQEVL RYRRMQKKAAASIA DLRHL  LM+A QP+ 
Sbjct: 61  FASPLVTTATGGSRGGGAAVTALGQEVLTRYRRMQKKAAASIAADLRHLHTLMNAPQPDD 120

Query: 121 ED 122
            D
Sbjct: 121 GD 122


>ref|YP_002219328.1| putative ModE family transcriptional regulator [Acidithiobacillus
           ferrooxidans ATCC 53993]
 ref|YP_002425211.1| helix-turn-helix domain protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gb|ACH83121.1| putative transcriptional regulator, ModE family [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gb|ACK78950.1| helix-turn-helix domain protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gb|EGQ63483.1| helix-turn-helix domain protein [Acidithiobacillus sp. GGI-221]
          Length = 123

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/119 (54%), Positives = 84/119 (70%)

Query: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIARTGSISGAAREMEMSYRRAWLLVEEMNRC 60
           M D    R+RV+  E IA GPGKA+LL+ I   GSIS AAR M MSYRRAWLLV+ MN C
Sbjct: 1   MTDHLQPRLRVLLAEAIAIGPGKAELLRHIREEGSISAAARAMNMSYRRAWLLVDTMNHC 60

Query: 61  FASPLVATATGGARGGGAAVTELGQEVLARYRRMQKKAAASIATDLRHLQGLMSAVQPE 119
           F +P+V+TATGG+ GGGA +TE+G+E+L RY  M+ KA  ++A D+   + LM   +PE
Sbjct: 61  FLAPVVSTATGGSHGGGAHLTEMGEEILTRYEAMEAKANLTLAPDIAEFRKLMQLHKPE 119


>ref|YP_004784615.1| putative ModE family transcriptional regulator [Acidithiobacillus
           ferrivorans SS3]
 gb|AEM48289.1| putative transcriptional regulator, ModE family [Acidithiobacillus
           ferrivorans SS3]
          Length = 123

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 83/119 (69%)

Query: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIARTGSISGAAREMEMSYRRAWLLVEEMNRC 60
           M D    R+R++  E IA GPGKA+LL+ I   GSIS AAR M MSYRRAWLLV+ MN C
Sbjct: 1   MTDHLQPRLRILLAEAIAVGPGKAELLRHIREKGSISAAARAMSMSYRRAWLLVDTMNHC 60

Query: 61  FASPLVATATGGARGGGAAVTELGQEVLARYRRMQKKAAASIATDLRHLQGLMSAVQPE 119
           F +PLV TATGG+ GGGA +TE+G+E+L RY  M+ KA A++A D+   + LM    PE
Sbjct: 61  FLAPLVGTATGGSHGGGAHLTEMGEEILKRYEAMESKANAALAPDIAEFRKLMQLHTPE 119


>ref|YP_004752220.1| putative transcriptional regulator [Collimonas fungivorans Ter331]
 gb|AEK61397.1| putative transcriptional regulator, ModE family [Collimonas
           fungivorans Ter331]
          Length = 122

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 75/115 (65%), Positives = 94/115 (81%)

Query: 1   MNDSKTLRVRVMQGETIAFGPGKADLLQAIARTGSISGAAREMEMSYRRAWLLVEEMNRC 60
           M +SK++R+RV+QG+ IAFGPGKA LL AI ++GSIS AAR + MSYRRAWLLVE MN+C
Sbjct: 1   MANSKSVRLRVLQGDAIAFGPGKAALLLAIHQSGSISAAARSLGMSYRRAWLLVEAMNQC 60

Query: 61  FASPLVATATGGARGGGAAVTELGQEVLARYRRMQKKAAASIATDLRHLQGLMSA 115
           F SPLVATATGGA+GGGA VT +G E+LARY+ MQ KA A++A D+ +   LM+A
Sbjct: 61  FKSPLVATATGGAKGGGAQVTPIGHEILARYQAMQNKAEAAVAKDMAYFDALMAA 115


>ref|ZP_05293259.1| hypothetical protein ACA_0746 [Acidithiobacillus caldus ATCC 51756]
 ref|YP_004748668.1| hypothetical protein Atc_1319 [Acidithiobacillus caldus SM-1]
 gb|EET26836.1| hypothetical protein ACA_0746 [Acidithiobacillus caldus ATCC 51756]
 gb|AEK57968.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
          Length = 133

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 79/115 (68%)

Query: 4   SKTLRVRVMQGETIAFGPGKADLLQAIARTGSISGAAREMEMSYRRAWLLVEEMNRCFAS 63
           S   R+R++  E IA GPGKA+LL+AI   GSIS AAR M MSYRRAWLLV+ MNR F  
Sbjct: 9   SNAPRLRILLAEAIAMGPGKAELLRAIREHGSISAAARAMGMSYRRAWLLVDTMNRSFIE 68

Query: 64  PLVATATGGARGGGAAVTELGQEVLARYRRMQKKAAASIATDLRHLQGLMSAVQP 118
           PLV TATGG+RGGGA +T LG +VL RY  M++KA A +  D+   + L+    P
Sbjct: 69  PLVGTATGGSRGGGARLTPLGMDVLRRYAAMEQKAQAVLQEDMDDFRRLLRPDGP 123