BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1486.p (166 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775520.1| S-adenosylmethionine:2-demethylmenaquinone m... 292 1e-77 ref|YP_296171.1| ribonuclease activity regulator protein RraA [R... 214 3e-54 ref|YP_002259687.1| regulator of ribonuclease activity a protein... 210 7e-53 ref|YP_726695.1| ribonuclease activity regulator protein RraA [R... 209 1e-52 ref|YP_004685951.1| ribonuclease E (RNase E) inhibitor protein R... 208 2e-52 >ref|YP_003775520.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase [Herbaspirillum seropedicae SmR1] emb|CAM32639.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase protein [Herbaspirillum seropedicae] gb|ADJ63612.1| S-adenosylmethionine:2-demethylmenaquinone methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 163 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 150/162 (92%), Positives = 154/162 (95%) Query: 5 SFATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPG 64 +FATCDLCDA+EDKL+AGTLHVLPPIFASFGRKQ F GPARTLKVFEDNV VR LETPG Sbjct: 2 TFATCDLCDAHEDKLAAGTLHVLPPIFASFGRKQSFCGPARTLKVFEDNVLVRATLETPG 61 Query: 65 NGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP 124 G VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP Sbjct: 62 QGHVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP 121 Query: 125 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSR+ L Sbjct: 122 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRSAL 163 >ref|YP_296171.1| ribonuclease activity regulator protein RraA [Ralstonia eutropha JMP134] sp|Q46ZV6|RRAA_CUPPJ RecName: Full=Putative regulator of ribonuclease activity gb|AAZ61327.1| Protein of unknown function 1935 [Ralstonia eutropha JMP134] Length = 165 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 104/159 (65%), Positives = 127/159 (79%) Query: 8 TCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGNGD 67 T DLCDANE +L+ GTL V+ P+F +FG++Q FAGPA TLK+FEDN VR+ALE+PG G Sbjct: 5 TTDLCDANEPRLADGTLRVMAPVFRAFGKQQAFAGPAATLKIFEDNSLVREALESPGQGR 64 Query: 68 VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRS 127 VLVVDGGGSLRCALVGGNL LA+ NGW GI+VNGCVRD EL+ C++GIRALA HPQ+S Sbjct: 65 VLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKS 124 Query: 128 FRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166 ++GAG+ D+ V + G V PG+WIY D DGVLVS +L Sbjct: 125 QKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163 >ref|YP_002259687.1| regulator of ribonuclease activity a protein [Ralstonia solanacearum IPO1609] emb|CAQ18763.1| regulator of ribonuclease activity a protein [Ralstonia solanacearum MolK2] emb|CAQ61619.1| regulator of ribonuclease activity a protein [Ralstonia solanacearum IPO1609] Length = 168 Score = 210 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 103/166 (62%), Positives = 124/166 (74%) Query: 1 MTLASFATCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKAL 60 MT DLCDA+ED+L++G + VL P+F SFG++ FAGPA TLKVFEDN VR L Sbjct: 1 MTTTMIPVTDLCDAHEDQLASGAVRVLAPVFRSFGKRAAFAGPAATLKVFEDNGLVRAVL 60 Query: 61 ETPGNGDVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRAL 120 E PG G VLVVDGGGSLRCALVGGNL +LA+DNGW G+LVNGCVRD EL C VG+ AL Sbjct: 61 EQPGGGRVLVVDGGGSLRCALVGGNLGKLAEDNGWEGLLVNGCVRDTRELAECNVGVHAL 120 Query: 121 ATHPQRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166 A HP++SF+K G+ DI V + G + PG+WIY D DGVLV+R +L Sbjct: 121 AAHPRKSFKKNQGERDIGVQMPGAYILPGEWIYGDEDGVLVAREKL 166 >ref|YP_726695.1| ribonuclease activity regulator protein RraA [Ralstonia eutropha H16] sp|Q0K9J4|RRAA_CUPNH RecName: Full=Putative regulator of ribonuclease activity emb|CAJ93327.1| demethylmenaquinone methyltransferase [Ralstonia eutropha H16] Length = 165 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 102/159 (64%), Positives = 125/159 (78%) Query: 8 TCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGNGD 67 T DLCDA+ED+L+ GTL V+ P+F +FG++ FAGPA TLKVFEDN VR ALE PG G Sbjct: 5 TTDLCDAHEDRLADGTLRVMAPVFRAFGKQGAFAGPAATLKVFEDNSLVRTALEAPGQGR 64 Query: 68 VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRS 127 VLV+DGGGSLRCALVGGNL LA+ NGW GI+VNGC+RD AEL+ C++GIRALA HPQ+S Sbjct: 65 VLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAVHPQKS 124 Query: 128 FRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166 ++ G++D+ V + G V PG+WIY D DGVLVS RL Sbjct: 125 QKRNVGESDVAVQMPGAVVRPGNWIYVDADGVLVSDERL 163 >ref|YP_004685951.1| ribonuclease E (RNase E) inhibitor protein RraA [Cupriavidus necator N-1] gb|AEI77470.1| ribonuclease E (RNase E) inhibitor protein RraA [Cupriavidus necator N-1] Length = 165 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 101/159 (63%), Positives = 125/159 (78%) Query: 8 TCDLCDANEDKLSAGTLHVLPPIFASFGRKQVFAGPARTLKVFEDNVQVRKALETPGNGD 67 T DLCDA+ED+L+ GTL V+ P+F +FG++ FAGPA TLKVFEDN VR ALE PG G Sbjct: 5 TTDLCDAHEDRLADGTLRVMAPVFRAFGKQGAFAGPASTLKVFEDNSLVRAALEAPGQGR 64 Query: 68 VLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHPQRS 127 VLV+DGGGSLRCALVGGNL LA+ NGW GI+VNGC+RD AEL+ C++GIRALA HPQ+S Sbjct: 65 VLVIDGGGSLRCALVGGNLGLLAEKNGWVGIVVNGCIRDTAELDVCDIGIRALAVHPQKS 124 Query: 128 FRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRTRL 166 ++ G++D+ V + G V PG+WIY D DGVLVS +L Sbjct: 125 QKRNVGESDVAVQMPGAVVRPGNWIYVDADGVLVSDEKL 163