BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1482.p (838 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775516.1| LysR family transcription regulator protein ... 591 e-166 ref|ZP_03271035.1| transcriptional regulator, LysR family [Burkh... 416 e-113 ref|ZP_02887037.1| transcriptional regulator, LysR family [Burkh... 410 e-112 ref|YP_620850.1| LysR family transcriptional regulator [Burkhold... 409 e-111 ref|ZP_04938952.1| Transcriptional regulator [Burkholderia cenoc... 408 e-111 >ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63608.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 304/326 (93%), Positives = 313/326 (96%) Query: 513 MDTLQNMRVFARVVEAGSFTQAAQQMSLTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 572 MDTLQNMRVFARVVEAGSFTQAAQQM LTTAHVSRAVADLERHLRTRL+NRTTRRIALTE Sbjct: 2 MDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 61 Query: 573 AGERYLLRCQQIMAYVDEAEAEASAAYVKPSGRLRIHAMTSLGQRYVIPSISGYHKRYPE 632 AGERYLLRCQQIM+YVDEAEAEASAAYVKPSGRLRIHAMTS GQRYVIPSISGYHKRYP+ Sbjct: 62 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 121 Query: 633 VAVELTLAQRIPDMLEEGYDVSLVVARELPDSGLIYRQLGSTFSILCASPAYLDKYGLPQ 692 VAVELTLAQRIPDMLEEGYDVSLV+ARELPDSGLIYRQLGSTFS+LCASPAYLDKYG PQ Sbjct: 122 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQ 181 Query: 693 HPGDLLNHACLQLVSPISPLIEWALEGPEGQTVIPVRSNFQVNVAEAMLTAVREGMGIGV 752 P DLLNHACLQLVSPISPL EW LEGPEG TV+ V+SNFQVNVAEAMLTA+REGMGIGV Sbjct: 182 QPADLLNHACLQLVSPISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIGV 241 Query: 753 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQE 812 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVD+TLQE Sbjct: 242 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDRTLQE 301 Query: 813 DHQALERLGSLREEMQGLAARGGTLA 838 DHQALERLGSLREEMQGLA R G A Sbjct: 302 DHQALERLGSLREEMQGLATRSGPQA 327 >ref|ZP_03271035.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EDZ97383.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 312 Score = 416 bits (1069), Expect = e-113, Method: Composition-based stats. Identities = 196/310 (63%), Positives = 251/310 (80%), Gaps = 1/310 (0%) Query: 513 MDTLQNMRVFARVVEAGSFTQAAQQMSLTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 572 MDTLQNMRVF RVVE+GSFT AAQ ++ TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVESGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 573 AGERYLLRCQQIMAYVDEAEAEASAAYVKPSGRLRIHAMTSLGQRYVIPSISGYHKRYPE 632 AGERYL RC+QI+AYVD+AEAEAS A+ +PSG+L++HAMTS GQ YV+P++S Y +RYP+ Sbjct: 61 AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQERYPD 120 Query: 633 VAVELTLAQRIPDMLEEGYDVSLVVARELPDSGLIYRQLGSTFSILCASPAYLDKYGLPQ 692 V +ELTLAQR+PD+L+EG+DVSL +A LPDSGL+ ++LGS FSI CASPAYL++ G+PQ Sbjct: 121 VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLERRGVPQ 180 Query: 693 HPGDLLNHACLQLVSPISPLIEWALEGPEGQTVIPV-RSNFQVNVAEAMLTAVREGMGIG 751 P DL H CLQ+VSPISP +W +GP G+ ++P+ + FQVNVAEAM AV EGMG+ Sbjct: 181 KPADLAQHTCLQMVSPISPPDKWTFDGPNGEEIVPLGATTFQVNVAEAMAVAVSEGMGVA 240 Query: 752 VLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQ 811 ++PIYSA+ LR+G +V +LP++ Q M +YALYPSRQYLDAKI TWV+++ + + TL Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFLRDELPSTLA 300 Query: 812 EDHQALERLG 821 D + L + Sbjct: 301 ADQEELRQFA 310 >ref|ZP_02887037.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT07383.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 312 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 198/310 (63%), Positives = 248/310 (80%), Gaps = 1/310 (0%) Query: 513 MDTLQNMRVFARVVEAGSFTQAAQQMSLTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 572 MDTLQNMRVF RVVEAGSFT AAQ ++ TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 573 AGERYLLRCQQIMAYVDEAEAEASAAYVKPSGRLRIHAMTSLGQRYVIPSISGYHKRYPE 632 AGERYL RC+QI+AYVD+AEAEAS A+ +PSG+L++HAMTS GQ YV+P++ Y +RYPE Sbjct: 61 AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPE 120 Query: 633 VAVELTLAQRIPDMLEEGYDVSLVVARELPDSGLIYRQLGSTFSILCASPAYLDKYGLPQ 692 V VELTLAQR+PD+L+EG+DVSL +A LPDSGL+ ++LGS FSI+CASPAYL+K+G+PQ Sbjct: 121 VHVELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIVCASPAYLEKHGVPQ 180 Query: 693 HPGDLLNHACLQLVSPISPLIEWALEGPEGQTVIPV-RSNFQVNVAEAMLTAVREGMGIG 751 P DL +HACLQ+V+P+ P +W +GP G+ I + + FQVNVAEAM AV GMGIG Sbjct: 181 TPSDLASHACLQMVTPVFPPDKWTFDGPNGEETIALGPATFQVNVAEAMAVAVTSGMGIG 240 Query: 752 VLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQ 811 ++PIYSA+ LR G +VR+LP + Q M +YALYPSRQYLDAKI TW++ + + + TL Sbjct: 241 LIPIYSAISGLRKGDLVRLLPDYTSQEMNLYALYPSRQYLDAKIRTWIEHLRDELPATLA 300 Query: 812 EDHQALERLG 821 D L + Sbjct: 301 VDEAELRQFA 310 >ref|YP_620850.1| LysR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_835095.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] ref|YP_001764725.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] ref|YP_002230588.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] gb|ABF75877.1| transcriptional regulator, LysR family [Burkholderia cenocepacia AU 1054] gb|ABK08202.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] gb|ACA90603.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] emb|CAR51756.1| LysR family regulatory protein [Burkholderia cenocepacia J2315] Length = 313 Score = 409 bits (1051), Expect = e-111, Method: Composition-based stats. Identities = 197/308 (63%), Positives = 252/308 (81%), Gaps = 1/308 (0%) Query: 513 MDTLQNMRVFARVVEAGSFTQAAQQMSLTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 572 MDTLQNMRVF RVV+AGSFT AAQQM+ TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 573 AGERYLLRCQQIMAYVDEAEAEASAAYVKPSGRLRIHAMTSLGQRYVIPSISGYHKRYPE 632 AGERYL RC+QI+AYVD+AEAEA A+ +PSG+L++H TSLGQ Y++P+I+ Y +RYP+ Sbjct: 61 AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPD 120 Query: 633 VAVELTLAQRIPDMLEEGYDVSLVVARELPDSGLIYRQLGSTFSILCASPAYLDKYGLPQ 692 V VELTLAQR+PD+L+EGYDV++VV R+LPDSGL+ ++LG ++S++CASP Y++ +G+PQ Sbjct: 121 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQ 180 Query: 693 HPGDLLNHACLQLVSPISPLIEWALEGPEGQTVIPVRS-NFQVNVAEAMLTAVREGMGIG 751 P DL H CL +V+P EWAL GP G V+P+ + F+VNVAEA+ AVREGMG+G Sbjct: 181 RPADLAQHVCLGMVAPGFHFDEWALAGPNGDEVVPITAPPFRVNVAEALAVAVREGMGVG 240 Query: 752 VLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQ 811 LP+YSA+ LR+G IVRV+P++R M +YALYPSRQYLDAKI TWVD++ E + TL+ Sbjct: 241 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLREELPLTLE 300 Query: 812 EDHQALER 819 D ALE+ Sbjct: 301 ADEAALEQ 308 >ref|ZP_04938952.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gb|EAY62123.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 325 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 198/308 (64%), Positives = 252/308 (81%), Gaps = 1/308 (0%) Query: 513 MDTLQNMRVFARVVEAGSFTQAAQQMSLTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 572 MDTLQNMRVF RVV+AGSFT AAQQM+ TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 13 MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 72 Query: 573 AGERYLLRCQQIMAYVDEAEAEASAAYVKPSGRLRIHAMTSLGQRYVIPSISGYHKRYPE 632 AGERYL RC+QI+AYVD+AEAEA A+ +PSG+L++H TSLGQ Y++P+I+ Y +RYP+ Sbjct: 73 AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRERYPD 132 Query: 633 VAVELTLAQRIPDMLEEGYDVSLVVARELPDSGLIYRQLGSTFSILCASPAYLDKYGLPQ 692 V VELTLAQR+PD+L+EGYDV++VV R+LPDSGL+ ++LG ++S++CASP Y++ +G+PQ Sbjct: 133 VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVESHGVPQ 192 Query: 693 HPGDLLNHACLQLVSPISPLIEWALEGPEGQTVIPVRS-NFQVNVAEAMLTAVREGMGIG 751 P DL H CL +V+P EWAL GP G V+P+ + F+VNVAEA+ AVREGMGIG Sbjct: 193 RPADLAQHVCLGMVAPGFHFDEWALAGPNGDEVVPITAPPFRVNVAEALAVAVREGMGIG 252 Query: 752 VLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQ 811 LP+YSA+ LR+G IVRV+P++R M +YALYPSRQYLDAKI TWVD++ E + TL+ Sbjct: 253 GLPLYSAIGWLRSGHIVRVMPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLREELPLTLE 312 Query: 812 EDHQALER 819 D ALE+ Sbjct: 313 ADEAALEQ 320