BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1481.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775515.1| NodT family protein [Herbaspirillum seropedi... 735 0.0 ref|YP_559659.1| aromatic acid efflux system, outer membrane lip... 459 e-127 ref|ZP_06840956.1| RND efflux system, outer membrane lipoprotein... 458 e-126 ref|YP_001896399.1| NodT family RND efflux system outer membrane... 448 e-123 ref|YP_004228913.1| NodT family RND efflux system, outer membran... 441 e-121 >ref|YP_003775515.1| NodT family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63607.1| RND efflux system, outer membrane lipoprotein, NodT family protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 467/487 (95%), Positives = 482/487 (98%) Query: 1 MTRIAFSKLPALTVIALSLTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQR 60 MTRIAFSKLP LTVIALSLT+AGCADQGGIQPQAQ+RDVAVLDAGQAIRQAASEAGWPQR Sbjct: 1 MTRIAFSKLPVLTVIALSLTMAGCADQGGIQPQAQVRDVAVLDAGQAIRQAASEAGWPQR 60 Query: 61 AWWQAYGDAQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKD 120 AWWQAYGDAQL+QLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKD Sbjct: 61 AWWQAYGDAQLDQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKD 120 Query: 121 WSDNVYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLDL 180 WSDNVYYGAAFR+KLTWNNTATLGLSYNVDLWDRNKNATLRA+DEMHAVAADARAAQLDL Sbjct: 121 WSDNVYYGAAFRNKLTWNNTATLGLSYNVDLWDRNKNATLRAQDEMHAVAADARAAQLDL 180 Query: 181 EGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETR 240 EGNVVRTYVQLALQYGLLDNTEA+LKEEQKILDLA RRFKGGLGTQLEITQAESPLPETR Sbjct: 181 EGNVVRTYVQLALQYGLLDNTEALLKEEQKILDLAHRRFKGGLGTQLEITQAESPLPETR 240 Query: 241 RQMEALQENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDIS 300 RQ+EAL ENIALIRNQLAALLGAGPGAADG+TRP MQLQT+LGLPSALPADLVGRRPDIS Sbjct: 241 RQIEALHENIALIRNQLAALLGAGPGAADGVTRPGMQLQTSLGLPSALPADLVGRRPDIS 300 Query: 301 AARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPI 360 AARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPI Sbjct: 301 AARWRVEAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPI 360 Query: 361 FEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQ 420 FEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQ+QAQ+SVQAAQ Sbjct: 361 FEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQEQAQQSVQAAQ 420 Query: 421 KNVDIATRAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEA 480 KNVDIATRAYQRGLTDYLN+LHAQTQWLRQQQIVQQLQAQRLAA+AALQTALGGGIE+ A Sbjct: 421 KNVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGIEEAA 480 Query: 481 PAKVAAQ 487 PAKVAA+ Sbjct: 481 PAKVAAR 487 >ref|YP_559659.1| aromatic acid efflux system, outer membrane lipoprotein [Burkholderia xenovorans LB400] gb|ABE31607.1| aromatic acid efflux system, outer membrane lipoprotein [Burkholderia xenovorans LB400] Length = 514 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 273/480 (56%), Positives = 347/480 (72%), Gaps = 1/480 (0%) Query: 9 LPALTVIALSLTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGD 68 + A V+ + LTIAGCA GG+ PQA A LDAG AIR A ++A WP WW+AY D Sbjct: 9 IAAAAVLTILLTIAGCASTGGVAPQASGVQPASLDAGNAIRAANADAQWPSVDWWRAYND 68 Query: 69 AQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYG 128 QLN+ + A AGNPS+A A ARVR+A SMA VA + P ++SV R+ WSDNVYYG Sbjct: 69 PQLNEWIDAAQAGNPSLAAAQARVREAMSMAGVARSALSPQVNGNLSVQRQKWSDNVYYG 128 Query: 129 AA-FRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLDLEGNVVRT 187 + +WNNT TLGLSY++D+W +++NA RA D HA AADARAAQL+LEGNVVRT Sbjct: 129 PGPLAGEQSWNNTGTLGLSYHLDIWGKDRNAAERALDAAHASAADARAAQLELEGNVVRT 188 Query: 188 YVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQ 247 Y+++++ Y LLD ++ L+++Q+I+DLA RR KGG+GTQLE++QAE+PLPE RQ++ ++ Sbjct: 189 YIEMSMNYALLDIAKSTLQQQQQIVDLASRRLKGGIGTQLEVSQAETPLPEYERQIDEIE 248 Query: 248 ENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRVE 307 E IAL RNQLAAL G GPGA D I RPT+ L T GLPSALPADL+G RPD+ AARW V Sbjct: 249 EKIALGRNQLAALAGKGPGAGDSIQRPTLSLNTPAGLPSALPADLIGHRPDVVAARWSVA 308 Query: 308 AAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLR 367 A A+GI VAKA FYP+INLLA IG AA G LF FL P+ + GPA+SLPI +GGRLR Sbjct: 309 AQARGIDVAKADFYPDINLLASIGGYAAMGPLFQFLKNPSHSWSGGPALSLPILDGGRLR 368 Query: 368 GQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIAT 427 QLGAASAGYD V+ YN + ALK ISDQV+ ++S+A Q + A SV A+KN D++ Sbjct: 369 SQLGAASAGYDEAVDRYNQSIVGALKDISDQVIRIRSLATQAEDADRSVATARKNYDLSR 428 Query: 428 RAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEAPAKVAAQ 487 Y+RGLTDYLN+L AQ Q L Q+ V ++QA+RL A A+L TALGGG++D A +A + Sbjct: 429 EGYRRGLTDYLNVLIAQNQLLHAQEGVAKIQAERLGAHASLVTALGGGLDDPANGPLANE 488 >ref|ZP_06840956.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] gb|EFG71246.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] Length = 514 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 273/480 (56%), Positives = 347/480 (72%), Gaps = 1/480 (0%) Query: 9 LPALTVIALSLTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGD 68 + A V+ + LTIAGCA GG+ PQA A LD G AIR A ++A WP WW+AY D Sbjct: 9 IAAAAVLTILLTIAGCASTGGVAPQASGVQPASLDVGNAIRAANADAQWPSVDWWRAYND 68 Query: 69 AQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYG 128 QLN+ + A AGNPS+A A ARVR+A SMA VA + P ++SV R+ W+DN+YYG Sbjct: 69 PQLNEWIDAAQAGNPSLAAAQARVREAMSMAGVARSALSPQVNGNLSVQRQKWADNLYYG 128 Query: 129 -AAFRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLDLEGNVVRT 187 A + +WNNT TLGLSY++D+W R+KNA RA D HA AADARAAQL+LEGNVVRT Sbjct: 129 PGALAGEQSWNNTGTLGLSYHLDIWGRDKNAAERALDAAHASAADARAAQLELEGNVVRT 188 Query: 188 YVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQ 247 Y+++++ Y LLD ++ L+++Q+I+DLA RR KGG+GTQLE++QAE+PLPE RQ++ ++ Sbjct: 189 YIEMSMNYALLDIAKSTLQQQQQIVDLANRRLKGGIGTQLEVSQAETPLPEYERQIDEIE 248 Query: 248 ENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRVE 307 E IAL RNQLAAL G GPGA D I RPT+ L T GLPSALPADL+G RPD+ AARW V Sbjct: 249 EKIALGRNQLAALAGKGPGAGDSIQRPTLSLNTPAGLPSALPADLIGHRPDVVAARWSVA 308 Query: 308 AAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLR 367 A A+GI VAKA FYP+INLLA IG AA G LF FL P+ + GPA+SLPI +GGRLR Sbjct: 309 AQARGIDVAKADFYPDINLLASIGGYAAMGPLFQFLKNPSHSWSGGPALSLPILDGGRLR 368 Query: 368 GQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIAT 427 QLGAASAGYD V+ YN + ALK ISDQV+ ++S+A Q + A SV A+KN D++ Sbjct: 369 SQLGAASAGYDEAVDRYNQSIVGALKDISDQVIRIRSLATQAEDADRSVATARKNYDLSR 428 Query: 428 RAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEAPAKVAAQ 487 Y+RGLTDYLN+L AQ Q L Q+ V ++QA+RL A A+L TALGGG++D A +A + Sbjct: 429 EGYRRGLTDYLNVLIAQNQLLHAQEGVAKIQAERLGAHASLVTALGGGLDDPANGPLANE 488 >ref|YP_001896399.1| NodT family RND efflux system outer membrane lipoprotein [Burkholderia phytofirmans PsJN] gb|ACD17175.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia phytofirmans PsJN] Length = 604 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 274/474 (57%), Positives = 345/474 (72%), Gaps = 2/474 (0%) Query: 9 LPALTVIALSLTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGD 68 + A V+ + LTIAGCA GG+ PQA + A LDAG AIR A ++A WP WW+AY D Sbjct: 9 IAAAAVLTILLTIAGCASTGGVAPQASGIEPASLDAGNAIRAANADAQWPALDWWRAYND 68 Query: 69 AQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYG 128 QLNQ + A AGNPS+A A ARVR+A SMA VA + P +S+ R+ W+DN+YYG Sbjct: 69 PQLNQWIEDAQAGNPSLAAAQARVREAMSMAGVARSALSPQVNGSLSIQRQKWADNLYYG 128 Query: 129 AA-FRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLDLEGNVVRT 187 + +WNNT TLGLSY++D+W ++KNA RA D HA +ADARAAQL+LEGNVVRT Sbjct: 129 PGPLAGEQSWNNTGTLGLSYHLDIWGKDKNAAERALDAAHASSADARAAQLELEGNVVRT 188 Query: 188 YVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQ 247 Y++++L Y LLD +A L+++Q+I+DLA RR KGG+GTQLE++QAE+PLPE RQ++ ++ Sbjct: 189 YIEMSLNYALLDIAKATLQQQQQIVDLANRRLKGGIGTQLEVSQAETPLPEYERQIDEIE 248 Query: 248 ENIALIRNQLAALLGAGPGAADGITRPTMQLQTA-LGLPSALPADLVGRRPDISAARWRV 306 E IAL RNQLAAL G GPGA D I RP++ LQ GLPSALPADL+G RPD+ AARW V Sbjct: 249 EKIALGRNQLAALAGKGPGAGDSIQRPSLSLQMGPAGLPSALPADLIGHRPDVVAARWTV 308 Query: 307 EAAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRL 366 A A+GI VAKA FYP+INLLA IG AA G LF FL P+ + GPA+SLPI +GGRL Sbjct: 309 AAQARGIDVAKADFYPDINLLASIGGYAAMGPLFQFLKNPSHSWSAGPALSLPILDGGRL 368 Query: 367 RGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIA 426 R QLGAASAGYD VE YN + ALK ISDQV+ ++S+A Q A SV AA+KN D++ Sbjct: 369 RSQLGAASAGYDEAVERYNQSIVGALKDISDQVIRIRSLATQADDADRSVAAARKNYDLS 428 Query: 427 TRAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEA 480 Y+RGLTDYLN+L AQ Q LR Q+ V ++QA+RL A A+L TALGGG++D A Sbjct: 429 REGYRRGLTDYLNVLIAQNQLLRAQEGVAKIQAERLGAHASLVTALGGGLDDPA 482 >ref|YP_004228913.1| NodT family RND efflux system, outer membrane lipoprotein [Burkholderia sp. CCGE1001] gb|ADX55853.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1001] Length = 510 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 268/479 (55%), Positives = 344/479 (71%), Gaps = 1/479 (0%) Query: 9 LPALTVIALSLTIAGCADQGGIQPQAQLRDVAVLDAGQAIRQAASEAGWPQRAWWQAYGD 68 + A V+A+ LTIAGCA GGI PQ D A LDAG AIR A ++AGWP WW+AY D Sbjct: 9 ITAAAVLAIPLTIAGCASTGGIAPQTNRTDPASLDAGSAIRAADADAGWPAADWWRAYRD 68 Query: 69 AQLNQLVTRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPSAQLDVSVGRKDWSDNVYYG 128 QL+ + A A NPS+A A ARVR+A SMA VA + P ++S+ R+ W+DN+YYG Sbjct: 69 PQLDAWIEAAQANNPSLAAAQARVREAMSMAGVARSALAPQVNGELSIKRQQWADNLYYG 128 Query: 129 AA-FRDKLTWNNTATLGLSYNVDLWDRNKNATLRAEDEMHAVAADARAAQLDLEGNVVRT 187 + +WNNT TL LSY++DLW +++NA RA D HA AADARAAQL+L+ NVVRT Sbjct: 129 PGPLAGEQSWNNTGTLALSYHLDLWGKDRNAAERALDAAHARAADARAAQLELQANVVRT 188 Query: 188 YVQLALQYGLLDNTEAMLKEEQKILDLAQRRFKGGLGTQLEITQAESPLPETRRQMEALQ 247 Y+Q++L Y LLD A L+++Q+I DLA RR KGG+GTQLE++QA++PLPE R+++AL+ Sbjct: 189 YIQMSLDYALLDIARATLQQQQQIADLASRRLKGGIGTQLEVSQAQTPLPEYEREIDALE 248 Query: 248 ENIALIRNQLAALLGAGPGAADGITRPTMQLQTALGLPSALPADLVGRRPDISAARWRVE 307 E IAL RNQLAAL G GPGA D I RP + L GLPSALPA+L+G RPD+ AARW V Sbjct: 249 EKIALGRNQLAALAGKGPGAGDAIQRPVLSLAAPAGLPSALPAELIGHRPDVVAARWTVA 308 Query: 308 AAAKGISVAKAAFYPNINLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLR 367 A A+GI VAKA FYP+I+LLA IG AA G LF FL P+ + GPA+SLPI +GGRLR Sbjct: 309 AQARGIDVAKAGFYPDIDLLASIGGYAAMGPLFQFLKNPSHSWSAGPALSLPILDGGRLR 368 Query: 368 GQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQKQAQESVQAAQKNVDIAT 427 +LGAASAGYD VEHYN + ALK ISDQV+ ++S+ Q + A+ S AA+KN +++ Sbjct: 369 SELGAASAGYDEAVEHYNQTIVGALKDISDQVIRIRSLDTQAEDARRSEAAARKNYELSR 428 Query: 428 RAYQRGLTDYLNILHAQTQWLRQQQIVQQLQAQRLAAFAALQTALGGGIEDEAPAKVAA 486 Y+RGLTDY+N+L AQ Q LR Q+ V ++QA+RL A A+L TALGGG++D A VA+ Sbjct: 429 EGYRRGLTDYVNVLIAQNQLLRAQEGVAKVQAERLGAHASLVTALGGGLDDPANGPVAS 487