BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1478.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004360353.1| hypothetical protein bgla_1g17510 [Burkholde...    75   4e-12
ref|YP_004228915.1| hypothetical protein BC1001_2439 [Burkholder...    74   5e-12
ref|ZP_02887034.1| protein of unknown function DUF1656 [Burkhold...    73   1e-11
ref|ZP_06840958.1| protein of unknown function DUF1656 [Burkhold...    72   2e-11
ref|YP_559661.1| hypothetical protein Bxe_A1344 [Burkholderia xe...    72   4e-11

>ref|YP_004360353.1| hypothetical protein bgla_1g17510 [Burkholderia gladioli BSR3]
 gb|AEA60397.1| hypothetical protein bgla_1g17510 [Burkholderia gladioli BSR3]
          Length = 67

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 49/66 (74%)

Query: 22 MPREISFFDAYIPTVLLLAVVAAVLAMLADRVLVRFGFYELTWHPALFRVSLFVCLASLL 81
          MPREI+ FDAY+PTV+L+ V+ A+L  + DR+L   G Y L WHP+LFR SL VC+   L
Sbjct: 2  MPREIAVFDAYMPTVVLMFVLGALLTWMVDRLLAATGLYRLVWHPSLFRASLLVCICGGL 61

Query: 82 GLAVYR 87
          GLAVYR
Sbjct: 62 GLAVYR 67


>ref|YP_004228915.1| hypothetical protein BC1001_2439 [Burkholderia sp. CCGE1001]
 gb|ADX55855.1| protein of unknown function DUF1656 [Burkholderia sp. CCGE1001]
          Length = 66

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query: 22 MPREISFFDAYIPTVLLLAVVAAVLAMLADRVLVRFGFYELTWHPALFRVSLFVCLASLL 81
          MPR+I+ FDAY+PT++LL V  A L  + DRV+   G Y + WHP+LFR SL VC+  LL
Sbjct: 1  MPRDIAVFDAYVPTIVLLFVAGAALTWVLDRVIAYTGVYRVVWHPSLFRASLLVCVCGLL 60

Query: 82 GLAVYR 87
          GLAVYR
Sbjct: 61 GLAVYR 66


>ref|ZP_02887034.1| protein of unknown function DUF1656 [Burkholderia graminis C4D1M]
 gb|EDT07380.1| protein of unknown function DUF1656 [Burkholderia graminis C4D1M]
          Length = 66

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 22 MPREISFFDAYIPTVLLLAVVAAVLAMLADRVLVRFGFYELTWHPALFRVSLFVCLASLL 81
          MPR+I+ FDAY+PT++LL V  A +  + DRV+   G Y + WHP+LFR SL VC+  +L
Sbjct: 1  MPRDIAVFDAYVPTIVLLFVAGAAITWVLDRVIAYTGVYRVVWHPSLFRASLLVCVCGVL 60

Query: 82 GLAVYR 87
          GLAVYR
Sbjct: 61 GLAVYR 66


>ref|ZP_06840958.1| protein of unknown function DUF1656 [Burkholderia sp. Ch1-1]
 gb|EFG71248.1| protein of unknown function DUF1656 [Burkholderia sp. Ch1-1]
          Length = 66

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 46/66 (69%)

Query: 22 MPREISFFDAYIPTVLLLAVVAAVLAMLADRVLVRFGFYELTWHPALFRVSLFVCLASLL 81
          MPR+I+  DAYIP ++LL +  A L  + DRV+   G Y + WHP+LFR SL VC+  +L
Sbjct: 1  MPRDIAVLDAYIPAIVLLFIAGAALTWMLDRVIAHTGLYRVVWHPSLFRASLLVCVCGML 60

Query: 82 GLAVYR 87
          GLAVYR
Sbjct: 61 GLAVYR 66


>ref|YP_559661.1| hypothetical protein Bxe_A1344 [Burkholderia xenovorans LB400]
 gb|ABE31609.1| Conserved hypothetical membrane protein [Burkholderia xenovorans
          LB400]
          Length = 66

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 46/66 (69%)

Query: 22 MPREISFFDAYIPTVLLLAVVAAVLAMLADRVLVRFGFYELTWHPALFRVSLFVCLASLL 81
          MPR+I+  DAYIP ++LL +  A L  + DRV+   G Y + WHP+LFR SL VC+  +L
Sbjct: 1  MPRDIAVLDAYIPAIVLLFIAGAALTWVLDRVIAHTGLYRVVWHPSLFRASLLVCVCGVL 60

Query: 82 GLAVYR 87
          GLAVYR
Sbjct: 61 GLAVYR 66