BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1477.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775513.1| multidrug resistance efflux pump protein [He... 506 e-141 ref|ZP_06840959.1| secretion protein HlyD family protein [Burkho... 367 1e-99 ref|YP_559662.1| aromatic acid efflux system EmrA subfamily memb... 349 3e-94 ref|YP_001896402.1| secretion protein HlyD [Burkholderia phytofi... 347 1e-93 ref|YP_001857813.1| secretion protein HlyD family protein [Burkh... 342 3e-92 >ref|YP_003775513.1| multidrug resistance efflux pump protein [Herbaspirillum seropedicae SmR1] gb|ADJ63605.1| multidrug resistance efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 312/324 (96%), Positives = 319/324 (98%) Query: 1 MPVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M VKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRA+VVNIAPDVSGQVVALP Sbjct: 1 MSVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRAEVVNIAPDVSGQVVALP 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLDVRKAEVEARRADLNMRRAQA 120 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKA+LDVR+AEVEARRADLNMRRAQA Sbjct: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKAELDVRRAEVEARRADLNMRRAQA 120 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQFQGAQAQYQAALSQRDTAKLNLER 180 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQ QGAQAQYQAALSQRDTA+LNLER Sbjct: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQLQGAQAQYQAALSQRDTARLNLER 180 Query: 181 TKVFSPVDGYITNLSVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRAKIQ 240 TKVFSPVDGYITNL+VRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRA+IQ Sbjct: 181 TKVFSPVDGYITNLNVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRARIQ 240 Query: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPDNVL 300 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRI LDKVP+NVL Sbjct: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIQLDKVPENVL 300 Query: 301 LASGLTCTVVLEPGSGKQQPVAKN 324 LASGLTCTVVLEPGSGKQ VAKN Sbjct: 301 LASGLTCTVVLEPGSGKQPAVAKN 324 >ref|ZP_06840959.1| secretion protein HlyD family protein [Burkholderia sp. Ch1-1] gb|EFG71249.1| secretion protein HlyD family protein [Burkholderia sp. Ch1-1] Length = 291 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 193/317 (60%), Positives = 244/317 (76%), Gaps = 28/317 (8%) Query: 1 MPVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M +++I + T IF++AIL+ LW HYM PWTRDGRVRA+++NIAPDVSG +V LP Sbjct: 1 MTIRNIVGFVATAVIFIVAILIGRVLWVHYMDEPWTRDGRVRAEIINIAPDVSGAIVDLP 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLDVRKAEVEARRADLNMRRAQA 120 V+DNQLVKKGDLLM+IDP+ Y LA++QA+AAV ARKA+L MRR A Sbjct: 61 VKDNQLVKKGDLLMQIDPSHYQLAVEQAQAAVAARKAEL--------------QMRRDDA 106 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQFQGAQAQYQAALSQRDTAKLNLER 180 +RRAD+DALVVS+E RE+A +A A+A YQ AL+ D AKLNLER Sbjct: 107 QRRADMDALVVSKENRENATHTASA--------------AEASYQQALATLDAAKLNLER 152 Query: 181 TKVFSPVDGYITNLSVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRAKIQ 240 T+V SPVDGY+TNLSV RGDYA G+AK+A++DSHSFWVY YFEETKLP + +GD+A ++ Sbjct: 153 TRVVSPVDGYVTNLSVFRGDYATVGSAKLAIVDSHSFWVYGYFEETKLPHVHVGDKAAVR 212 Query: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPDNVL 300 L++G +++GHV+SI+RGIYDRDNP+SREL ADVNPTFNWVRLAQR+PVR+ +D VPDNV+ Sbjct: 213 LMSGGTLQGHVESISRGIYDRDNPESRELLADVNPTFNWVRLAQRVPVRVKIDSVPDNVV 272 Query: 301 LASGLTCTVVLEPGSGK 317 LA+G+TCTVV+ PGS K Sbjct: 273 LAAGITCTVVITPGSAK 289 >ref|YP_559662.1| aromatic acid efflux system EmrA subfamily membrane fusion protein [Burkholderia xenovorans LB400] gb|ABE31610.1| aromatic acid efflux system, membrane fusion protein, EmrA subfamily [Burkholderia xenovorans LB400] Length = 291 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 191/317 (60%), Positives = 243/317 (76%), Gaps = 28/317 (8%) Query: 1 MPVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M +++I + T IF++AIL+ LW HYM PWTRDGRVRA+++NIAPDVSG +V LP Sbjct: 1 MTIRNIVGFVATAVIFIVAILIGRVLWVHYMDEPWTRDGRVRAEIINIAPDVSGAIVDLP 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLDVRKAEVEARRADLNMRRAQA 120 V+DNQLVKKGDLLM+IDP+ Y LA++QA+AAV ARKA+L MRR A Sbjct: 61 VKDNQLVKKGDLLMQIDPSHYQLAVEQAQAAVAARKAEL--------------QMRRDDA 106 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQFQGAQAQYQAALSQRDTAKLNLER 180 +RRAD+DALVVS+E RE+A +A A+A YQ AL+ D A+LNLER Sbjct: 107 QRRADMDALVVSKENRENATHTASA--------------AEASYQQALAALDAARLNLER 152 Query: 181 TKVFSPVDGYITNLSVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRAKIQ 240 T+V SPVDGY+TNLSV RGDYA G+AK+A++DSHSFWVY YFEETKLP + +GD+A ++ Sbjct: 153 TRVVSPVDGYVTNLSVFRGDYATVGSAKLAIVDSHSFWVYGYFEETKLPHVHVGDKAAVR 212 Query: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPDNVL 300 L++G +++GHV+SI+RGIYDRDNP+SREL ADVNPTFNWVRLAQR+PVR+ +D VPDNV+ Sbjct: 213 LMSGGTLQGHVESISRGIYDRDNPESRELLADVNPTFNWVRLAQRVPVRVKIDSVPDNVV 272 Query: 301 LASGLTCTVVLEPGSGK 317 LA+G+TCTVV+ P S K Sbjct: 273 LAAGITCTVVITPASAK 289 >ref|YP_001896402.1| secretion protein HlyD [Burkholderia phytofirmans PsJN] gb|ACD17178.1| secretion protein HlyD family protein [Burkholderia phytofirmans PsJN] Length = 292 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 191/317 (60%), Positives = 246/317 (77%), Gaps = 28/317 (8%) Query: 1 MPVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M ++++ + T IF++AIL+ LW HYM PWTRDGRVRA++VN+APDVSG VV LP Sbjct: 1 MTIRNLVGFVATAVIFIVAILIGRVLWVHYMDEPWTRDGRVRAEIVNVAPDVSGAVVDLP 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLDVRKAEVEARRADLNMRRAQA 120 V+DNQLVKKGDLLM+IDP+ Y +A++QA+AAV ARKA+L M+R A Sbjct: 61 VKDNQLVKKGDLLMQIDPSHYQIAVEQAQAAVAARKAEL--------------QMKRDDA 106 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQFQGAQAQYQAALSQRDTAKLNLER 180 +RRAD+DALVVS+E+RE+A +A A+A YQ AL+ D AKLNLER Sbjct: 107 QRRADMDALVVSKESRENATHTASA--------------AEASYQQALAALDAAKLNLER 152 Query: 181 TKVFSPVDGYITNLSVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRAKIQ 240 T+V SPVDGY+TNLSV RGDYA AGAAK+A++DSHSFWVY YFEETKLP + +GD+A+++ Sbjct: 153 TRVVSPVDGYVTNLSVFRGDYATAGAAKLAIVDSHSFWVYGYFEETKLPHVRVGDKAEVR 212 Query: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPDNVL 300 L++G +++GHV+SI+RGIYDRDNP+SREL ADVNPTFNWVRLAQR+PVR+ +D VPD+V+ Sbjct: 213 LMSGGTLQGHVESISRGIYDRDNPESRELLADVNPTFNWVRLAQRVPVRVRIDSVPDDVV 272 Query: 301 LASGLTCTVVLEPGSGK 317 LA+G+TCTVV+ P GK Sbjct: 273 LAAGITCTVVVMPAGGK 289 >ref|YP_001857813.1| secretion protein HlyD family protein [Burkholderia phymatum STM815] gb|ACC70767.1| secretion protein HlyD family protein [Burkholderia phymatum STM815] Length = 286 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 190/313 (60%), Positives = 242/313 (77%), Gaps = 28/313 (8%) Query: 1 MPVKSIFRVLITTAIFLLAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M +++I + T +F++AIL+ +LW HYM PWTRDGRVRA+VVNIAPDVSG VVALP Sbjct: 1 MTIRNIIGFIATAIVFVVAILIGRALWVHYMDEPWTRDGRVRAEVVNIAPDVSGAVVALP 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLDVRKAEVEARRADLNMRRAQA 120 VRDNQ V KGDLLM+IDP+ Y +A++QA+AAV ARK++L MRR A Sbjct: 61 VRDNQFVHKGDLLMQIDPSHYQIAVEQAQAAVAARKSEL--------------QMRRDDA 106 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQFQGAQAQYQAALSQRDTAKLNLER 180 +RRAD+D+LVVS+E+RE+A +A A+AQYQ AL+ D AKLNLER Sbjct: 107 QRRADMDSLVVSKESRENATHTASA--------------AEAQYQQALAALDAAKLNLER 152 Query: 181 TKVFSPVDGYITNLSVRRGDYAAAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDRAKIQ 240 T+V +PVDGY+TNL+V RGDYA AG+AK+AV+DS+SFWVY YFEETKLP + +GD+A I+ Sbjct: 153 TRVVAPVDGYVTNLNVYRGDYAIAGSAKLAVVDSNSFWVYGYFEETKLPHVKVGDKADIR 212 Query: 241 LINGASMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPDNVL 300 L++G +++GHV+SI+RGIYDRDNPQSREL ADVNPTFNWVRLAQR+PVR+ +D VPD VL Sbjct: 213 LMSGGTLKGHVESISRGIYDRDNPQSRELLADVNPTFNWVRLAQRVPVRVKIDSVPDGVL 272 Query: 301 LASGLTCTVVLEP 313 L++G TCTVV+ P Sbjct: 273 LSAGTTCTVVVTP 285