BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1476.p         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775512.1| hypothetical protein Hsero_2104 [Herbaspiril...   151   3e-35
ref|YP_004491090.1| helix-turn-helix domain-containing protein [...    75   3e-12
ref|YP_776704.1| hypothetical protein Bamb_4821 [Burkholderia am...    73   2e-11
ref|ZP_06064735.1| predicted protein [Acinetobacter johnsonii SH...    71   5e-11
ref|ZP_06069650.1| predicted protein [Acinetobacter lwoffii SH14...    70   1e-10

>ref|YP_003775512.1| hypothetical protein Hsero_2104 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63604.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 95

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 90/95 (94%), Positives = 92/95 (96%)

Query: 1  MDKRFKPLSAIEQMEERRALFDELAADPTLPVPAVVRKIRTTLRLTIAEYAKVCGVSART 60
          MDKRFKPLSAIEQMEERRALFDELAA PTLPVPAVVRKIRTTLRLTIAEYAK+CGVSART
Sbjct: 1  MDKRFKPLSAIEQMEERRALFDELAAHPTLPVPAVVRKIRTTLRLTIAEYAKLCGVSART 60

Query: 61 LQDIELGESSPTLATADKLLKPVGMCVGAVMRKRP 95
          LQDIE GESSPTLATADKLLKPVGM VGAV+RKRP
Sbjct: 61 LQDIERGESSPTLATADKLLKPVGMSVGAVVRKRP 95


>ref|YP_004491090.1| helix-turn-helix domain-containing protein [Delftia sp. Cs1-4]
 gb|AEF92735.1| helix-turn-helix domain protein [Delftia sp. Cs1-4]
          Length = 107

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query: 1  MDKRFKPLSAIEQMEERRALFDELAADPTLPVPAVVRKIRTTLRLTIAEYAKVCGVSART 60
          MDKRF P+   +Q+E RR   D++ A P   +P  VR ++ T+RLT  E AK+CGVS RT
Sbjct: 1  MDKRFTPIPIAQQLELRRQAIDDVLAHPEWSLPQAVRHLKKTMRLTTTEMAKLCGVSYRT 60

Query: 61 LQDIELGESSPTLATADKLLKPVGMCVGAV 90
          LQDIE   S  ++ T +++L  +G+ +G V
Sbjct: 61 LQDIEQERSEGSVQTMNRILAMLGLKLGVV 90


>ref|YP_776704.1| hypothetical protein Bamb_4821 [Burkholderia ambifaria AMMD]
 gb|ABI90370.1| hypothetical protein Bamb_4821 [Burkholderia ambifaria AMMD]
          Length = 109

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 58/92 (63%)

Query: 1   MDKRFKPLSAIEQMEERRALFDELAADPTLPVPAVVRKIRTTLRLTIAEYAKVCGVSART 60
           MD+R+  +S  EQ+  RR   D++ A P  P+   VR ++ T+RLT AE AK+ GVS +T
Sbjct: 15  MDQRYNAMSLPEQLALRRQAIDDVLAHPEWPLRESVRHLKKTMRLTSAEMAKLAGVSTKT 74

Query: 61  LQDIELGESSPTLATADKLLKPVGMCVGAVMR 92
           +QDIE G S  T+ T +++   +G+ +G V R
Sbjct: 75  IQDIEQGRSDGTVQTMNRIFGMLGLKLGVVRR 106


>ref|ZP_06064735.1| predicted protein [Acinetobacter johnsonii SH046]
 gb|EEY94690.1| predicted protein [Acinetobacter johnsonii SH046]
          Length = 92

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 57/85 (67%)

Query: 1  MDKRFKPLSAIEQMEERRALFDELAADPTLPVPAVVRKIRTTLRLTIAEYAKVCGVSART 60
          MDKRF PLS IEQ+ +R+ + + +  +P  P+  V + IR+ L LT+++ AK+  +S +T
Sbjct: 1  MDKRFTPLSQIEQIRKRQYVLEAIQQNPDWPINVVAKFIRSELHLTLSDMAKITKISLQT 60

Query: 61 LQDIELGESSPTLATADKLLKPVGM 85
          LQ++E   ++PTL T +KLL   G+
Sbjct: 61 LQNLEKPNTNPTLETINKLLTAFGL 85


>ref|ZP_06069650.1| predicted protein [Acinetobacter lwoffii SH145]
 gb|EEY89694.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 93

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 56/85 (65%)

Query: 1  MDKRFKPLSAIEQMEERRALFDELAADPTLPVPAVVRKIRTTLRLTIAEYAKVCGVSART 60
          MDKRFKPL+ I+QM++R ++ + ++ +P  P   V R IRT L LT+ + AK+  ++ +T
Sbjct: 1  MDKRFKPLTPIQQMQKRLSVLETVSNNPDWPFHQVARFIRTELHLTLNDMAKITKIAPQT 60

Query: 61 LQDIELGESSPTLATADKLLKPVGM 85
          LQ +E  E +PTL +  KLL   G+
Sbjct: 61 LQKMEQPEGNPTLKSMQKLLDAFGL 85