BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1466.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775503.1| hypothetical protein Hsero_2095 [Herbaspiril...   301   4e-80
ref|YP_004753935.1| hypothetical protein CFU_3288 [Collimonas fu...   132   2e-29

>ref|YP_003775503.1| hypothetical protein Hsero_2095 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63595.1| hypothetical protein Hsero_2095 [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  301 bits (770), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 150/181 (82%), Positives = 159/181 (87%), Gaps = 3/181 (1%)

Query: 1   MLRHFVQRRQD---GGNVCTLATSKMHFKLKRMENGMNHKIKTLLAAAGLFGTLLASLPA 57
           MLRHF+  R      GNVCT A SK  FKL +  NGMN KIKTLLA AGLFG +LASLPA
Sbjct: 9   MLRHFLLCRPVSLLAGNVCTQAPSKTLFKLNKDGNGMNIKIKTLLATAGLFGAVLASLPA 68

Query: 58  HAENWQSLGGSDTSELLVDTDSIVESGGIREAWSMWNFKEARPNNGDKSFPALKSYKDLH 117
           HAENWQSLGG+D +ELL+DTDSIVESGG+REAWS+WNFKEARPNNGDKSFP LKSYKDLH
Sbjct: 69  HAENWQSLGGTDQAELLIDTDSIVESGGVREAWSLWNFKEARPNNGDKSFPTLKSYKDLH 128

Query: 118 QYNCKAGSMKLVREIIFAENDGKGDKRDHSDALKGQEFIKPKPMSVGDAMLQAVCNFELK 177
           QYNCKAG+MKLVREIIFAENDGKGDKRDHSDALKG EFIKPKPMSVGDAMLQAVC FELK
Sbjct: 129 QYNCKAGTMKLVREIIFAENDGKGDKRDHSDALKGMEFIKPKPMSVGDAMLQAVCTFELK 188

Query: 178 K 178
           K
Sbjct: 189 K 189


>ref|YP_004753935.1| hypothetical protein CFU_3288 [Collimonas fungivorans Ter331]
 gb|AEK63112.1| hypothetical protein CFU_3288 [Collimonas fungivorans Ter331]
          Length = 159

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 83/119 (69%), Gaps = 1/119 (0%)

Query: 59  AENWQSLGGSDTSELLVDTDSIVESGGIREAWSMWNFKEARPNNGD-KSFPALKSYKDLH 117
           A +WQS+G SDT+EL +D +SI ++ GIREAWSMWNFKEAR N+GD K  P  KSY+D  
Sbjct: 20  APDWQSVGSSDTAELKLDQNSIKDNKGIREAWSMWNFKEARKNDGDAKVLPTFKSYQDFT 79

Query: 118 QYNCKAGSMKLVREIIFAENDGKGDKRDHSDALKGQEFIKPKPMSVGDAMLQAVCNFEL 176
            Y+CKA ++ L REI+FAE DG G + DHSDALK   +  P   SV + M+  VC F L
Sbjct: 80  VYDCKAKTLSLKREILFAEADGAGARVDHSDALKNSTYAAPAKDSVAEVMMNFVCAFPL 138